Experiment: m.b. Choline chloride 358.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2519 and HP15_2520 are separated by 101 nucleotides HP15_2520 and HP15_2521 are separated by 34 nucleotides HP15_2521 and HP15_2522 are separated by 126 nucleotides HP15_2522 and HP15_2523 are separated by 35 nucleotides HP15_2523 and HP15_2524 are separated by 67 nucleotides
HP15_2519: HP15_2519 - DNA topoisomerase IV subunit A, at 2,660,077 to 2,662,386
_2519
HP15_2520: HP15_2520 - hypothetical protein, at 2,662,488 to 2,662,631
_2520
HP15_2521: HP15_2521 - conserved hypothetical protein, membrane, at 2,662,666 to 2,662,908
_2521
HP15_2522: HP15_2522 - methyl-accepting chemotaxis sensory transducer, at 2,663,035 to 2,664,672
_2522
HP15_2523: HP15_2523 - hypothetical protein, at 2,664,708 to 2,665,289
_2523
HP15_2524: HP15_2524 - inner membrane protein, at 2,665,357 to 2,665,902
_2524
Position (kb)
2663
2664
2665 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2662.546 kb on + strand, within HP15_2520 at 2662.554 kb on - strand, within HP15_2520 at 2662.595 kb on + strand, within HP15_2520 at 2662.609 kb on + strand, within HP15_2520 at 2662.621 kb on + strand at 2662.989 kb on + strand at 2663.025 kb on + strand at 2663.127 kb on + strand at 2663.273 kb on - strand, within HP15_2522 at 2663.323 kb on + strand, within HP15_2522 at 2663.323 kb on + strand, within HP15_2522 at 2663.331 kb on - strand, within HP15_2522 at 2663.331 kb on - strand, within HP15_2522 at 2663.331 kb on - strand, within HP15_2522 at 2663.331 kb on - strand, within HP15_2522 at 2663.459 kb on + strand, within HP15_2522 at 2663.511 kb on - strand, within HP15_2522 at 2663.535 kb on + strand, within HP15_2522 at 2663.560 kb on + strand, within HP15_2522 at 2663.575 kb on + strand, within HP15_2522 at 2663.590 kb on - strand, within HP15_2522 at 2663.601 kb on - strand, within HP15_2522 at 2663.601 kb on - strand, within HP15_2522 at 2663.638 kb on + strand, within HP15_2522 at 2663.648 kb on + strand, within HP15_2522 at 2663.648 kb on + strand, within HP15_2522 at 2663.656 kb on - strand, within HP15_2522 at 2663.720 kb on + strand, within HP15_2522 at 2663.728 kb on - strand, within HP15_2522 at 2663.730 kb on + strand, within HP15_2522 at 2663.738 kb on - strand, within HP15_2522 at 2663.738 kb on - strand, within HP15_2522 at 2663.820 kb on + strand, within HP15_2522 at 2663.881 kb on + strand, within HP15_2522 at 2664.002 kb on + strand, within HP15_2522 at 2664.008 kb on - strand, within HP15_2522 at 2664.053 kb on + strand, within HP15_2522 at 2664.098 kb on - strand, within HP15_2522 at 2664.169 kb on - strand, within HP15_2522 at 2664.268 kb on - strand, within HP15_2522 at 2664.441 kb on + strand, within HP15_2522 at 2664.478 kb on - strand, within HP15_2522 at 2664.488 kb on - strand, within HP15_2522 at 2664.516 kb on + strand at 2664.516 kb on + strand at 2664.545 kb on + strand at 2664.568 kb on + strand at 2664.680 kb on + strand at 2664.901 kb on - strand, within HP15_2523 at 2664.910 kb on - strand, within HP15_2523 at 2665.450 kb on + strand, within HP15_2524 at 2665.484 kb on + strand, within HP15_2524 at 2665.585 kb on + strand, within HP15_2524 at 2665.641 kb on + strand, within HP15_2524
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM remove 2,662,546 + HP15_2520 0.40 +1.0 2,662,554 - HP15_2520 0.46 -1.9 2,662,595 + HP15_2520 0.74 -0.1 2,662,609 + HP15_2520 0.84 -1.7 2,662,621 + -3.6 2,662,989 + +0.3 2,663,025 + +0.0 2,663,127 + +1.4 2,663,273 - HP15_2522 0.15 +0.1 2,663,323 + HP15_2522 0.18 +0.4 2,663,323 + HP15_2522 0.18 +1.4 2,663,331 - HP15_2522 0.18 -1.0 2,663,331 - HP15_2522 0.18 +1.2 2,663,331 - HP15_2522 0.18 +0.4 2,663,331 - HP15_2522 0.18 +0.2 2,663,459 + HP15_2522 0.26 +0.4 2,663,511 - HP15_2522 0.29 +1.0 2,663,535 + HP15_2522 0.31 -0.4 2,663,560 + HP15_2522 0.32 +0.3 2,663,575 + HP15_2522 0.33 +0.1 2,663,590 - HP15_2522 0.34 +0.2 2,663,601 - HP15_2522 0.35 +1.0 2,663,601 - HP15_2522 0.35 +0.1 2,663,638 + HP15_2522 0.37 +0.4 2,663,648 + HP15_2522 0.37 -1.5 2,663,648 + HP15_2522 0.37 +0.3 2,663,656 - HP15_2522 0.38 -1.7 2,663,720 + HP15_2522 0.42 -0.0 2,663,728 - HP15_2522 0.42 -0.3 2,663,730 + HP15_2522 0.42 +0.3 2,663,738 - HP15_2522 0.43 -1.7 2,663,738 - HP15_2522 0.43 +0.0 2,663,820 + HP15_2522 0.48 +0.7 2,663,881 + HP15_2522 0.52 +0.2 2,664,002 + HP15_2522 0.59 +2.0 2,664,008 - HP15_2522 0.59 +0.5 2,664,053 + HP15_2522 0.62 +1.2 2,664,098 - HP15_2522 0.65 +0.6 2,664,169 - HP15_2522 0.69 +0.2 2,664,268 - HP15_2522 0.75 +0.6 2,664,441 + HP15_2522 0.86 -1.9 2,664,478 - HP15_2522 0.88 +0.5 2,664,488 - HP15_2522 0.89 -0.8 2,664,516 + -0.3 2,664,516 + -2.6 2,664,545 + +0.2 2,664,568 + +0.3 2,664,680 + +0.4 2,664,901 - HP15_2523 0.33 +0.0 2,664,910 - HP15_2523 0.35 -1.4 2,665,450 + HP15_2524 0.17 -0.7 2,665,484 + HP15_2524 0.23 -0.2 2,665,585 + HP15_2524 0.42 +0.1 2,665,641 + HP15_2524 0.52 +0.9
Or see this region's nucleotide sequence