Experiment: m.b. Choline chloride 358.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_251 and HP15_252 overlap by 7 nucleotides HP15_252 and HP15_253 are separated by 183 nucleotides
HP15_251: HP15_251 - diguanylate cyclase, at 239,531 to 241,024
_251
HP15_252: HP15_252 - conserved hypothetical protein, at 241,018 to 241,257
_252
HP15_253: HP15_253 - extracellular solute-binding protein, family 3, at 241,441 to 244,149
_253
Position (kb) 241
242 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 240.021 kb on + strand, within HP15_251 at 240.021 kb on + strand, within HP15_251 at 240.021 kb on + strand, within HP15_251 at 240.029 kb on - strand, within HP15_251 at 240.029 kb on - strand, within HP15_251 at 240.104 kb on + strand, within HP15_251 at 240.104 kb on + strand, within HP15_251 at 240.104 kb on + strand, within HP15_251 at 240.104 kb on + strand, within HP15_251 at 240.104 kb on + strand, within HP15_251 at 240.112 kb on + strand, within HP15_251 at 240.112 kb on - strand, within HP15_251 at 240.112 kb on - strand, within HP15_251 at 240.125 kb on - strand, within HP15_251 at 240.135 kb on - strand, within HP15_251 at 240.206 kb on + strand, within HP15_251 at 240.214 kb on + strand, within HP15_251 at 240.233 kb on + strand, within HP15_251 at 240.236 kb on - strand, within HP15_251 at 240.236 kb on - strand, within HP15_251 at 240.246 kb on - strand, within HP15_251 at 240.263 kb on - strand, within HP15_251 at 240.327 kb on + strand, within HP15_251 at 240.329 kb on - strand, within HP15_251 at 240.357 kb on - strand, within HP15_251 at 240.436 kb on + strand, within HP15_251 at 240.444 kb on - strand, within HP15_251 at 240.444 kb on - strand, within HP15_251 at 240.451 kb on + strand, within HP15_251 at 240.472 kb on + strand, within HP15_251 at 240.485 kb on - strand, within HP15_251 at 240.489 kb on + strand, within HP15_251 at 240.509 kb on + strand, within HP15_251 at 240.544 kb on - strand, within HP15_251 at 240.553 kb on - strand, within HP15_251 at 240.559 kb on + strand, within HP15_251 at 240.610 kb on - strand, within HP15_251 at 240.629 kb on + strand, within HP15_251 at 240.642 kb on - strand, within HP15_251 at 240.672 kb on - strand, within HP15_251 at 240.921 kb on + strand at 240.967 kb on + strand at 240.981 kb on + strand at 240.991 kb on + strand at 241.000 kb on - strand at 241.016 kb on - strand at 241.120 kb on - strand, within HP15_252 at 241.120 kb on - strand, within HP15_252 at 241.333 kb on + strand at 241.392 kb on + strand at 241.454 kb on - strand at 241.559 kb on + strand at 241.630 kb on - strand at 241.644 kb on + strand at 241.672 kb on + strand at 241.680 kb on - strand at 241.695 kb on - strand at 241.877 kb on - strand, within HP15_253 at 242.174 kb on + strand, within HP15_253 at 242.194 kb on + strand at 242.194 kb on + strand, within HP15_253 at 242.212 kb on - strand, within HP15_253
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM remove 240,021 + HP15_251 0.33 +0.1 240,021 + HP15_251 0.33 -0.6 240,021 + HP15_251 0.33 -1.2 240,029 - HP15_251 0.33 +0.1 240,029 - HP15_251 0.33 +0.9 240,104 + HP15_251 0.38 -1.4 240,104 + HP15_251 0.38 +0.4 240,104 + HP15_251 0.38 +0.5 240,104 + HP15_251 0.38 -1.6 240,104 + HP15_251 0.38 +0.3 240,112 + HP15_251 0.39 +1.0 240,112 - HP15_251 0.39 -1.2 240,112 - HP15_251 0.39 -0.8 240,125 - HP15_251 0.40 -1.2 240,135 - HP15_251 0.40 +1.0 240,206 + HP15_251 0.45 +0.0 240,214 + HP15_251 0.46 +0.5 240,233 + HP15_251 0.47 -2.0 240,236 - HP15_251 0.47 -1.6 240,236 - HP15_251 0.47 +0.4 240,246 - HP15_251 0.48 +0.3 240,263 - HP15_251 0.49 -0.2 240,327 + HP15_251 0.53 -1.7 240,329 - HP15_251 0.53 -1.2 240,357 - HP15_251 0.55 +0.3 240,436 + HP15_251 0.61 -2.6 240,444 - HP15_251 0.61 -0.7 240,444 - HP15_251 0.61 -0.6 240,451 + HP15_251 0.62 -0.2 240,472 + HP15_251 0.63 +0.1 240,485 - HP15_251 0.64 +0.3 240,489 + HP15_251 0.64 -1.0 240,509 + HP15_251 0.65 +0.2 240,544 - HP15_251 0.68 -1.2 240,553 - HP15_251 0.68 -1.1 240,559 + HP15_251 0.69 +0.3 240,610 - HP15_251 0.72 +0.0 240,629 + HP15_251 0.73 -0.4 240,642 - HP15_251 0.74 +0.6 240,672 - HP15_251 0.76 +0.0 240,921 + +0.4 240,967 + +1.2 240,981 + +0.7 240,991 + +0.6 241,000 - -1.4 241,016 - +0.0 241,120 - HP15_252 0.42 +0.0 241,120 - HP15_252 0.42 -2.0 241,333 + -1.3 241,392 + -4.6 241,454 - -2.2 241,559 + -2.9 241,630 - -3.7 241,644 + -2.9 241,672 + +0.0 241,680 - -3.2 241,695 - -3.2 241,877 - HP15_253 0.16 -4.7 242,174 + HP15_253 0.27 -4.3 242,194 + -0.6 242,194 + HP15_253 0.28 -4.8 242,212 - HP15_253 0.28 -1.6
Or see this region's nucleotide sequence