Strain Fitness in Marinobacter adhaerens HP15 around HP15_2464

Experiment: m.b. Choline chloride 358.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2463 and HP15_2464 are separated by 412 nucleotidesHP15_2464 and HP15_2465 are separated by 162 nucleotides HP15_2463: HP15_2463 - sulfate adenylyltransferase, large subunit, at 2,601,752 to 2,603,410 _2463 HP15_2464: HP15_2464 - nucleoid-associated protein NdpA, at 2,603,823 to 2,604,839 _2464 HP15_2465: HP15_2465 - tRNA guanosine-2'-O-methyltransferase, at 2,605,002 to 2,605,739 _2465 Position (kb) 2603 2604 2605Strain fitness (log2 ratio) -2 -1 0 1 2at 2602.824 kb on + strand, within HP15_2463at 2602.831 kb on - strand, within HP15_2463at 2602.831 kb on - strand, within HP15_2463at 2602.831 kb on - strand, within HP15_2463at 2602.856 kb on + strand, within HP15_2463at 2603.031 kb on + strand, within HP15_2463at 2603.039 kb on - strand, within HP15_2463at 2603.157 kb on - strand, within HP15_2463at 2603.183 kb on - strand, within HP15_2463at 2603.183 kb on - strand, within HP15_2463at 2603.191 kb on - strand, within HP15_2463at 2603.202 kb on - strand, within HP15_2463at 2603.303 kb on - strandat 2603.418 kb on + strandat 2603.553 kb on + strandat 2603.613 kb on + strandat 2603.621 kb on - strandat 2603.623 kb on + strandat 2603.777 kb on + strandat 2603.779 kb on - strandat 2603.792 kb on - strandat 2603.792 kb on - strandat 2603.792 kb on - strandat 2603.847 kb on + strandat 2603.861 kb on + strandat 2603.931 kb on + strand, within HP15_2464at 2603.965 kb on - strand, within HP15_2464at 2604.000 kb on + strand, within HP15_2464at 2604.110 kb on - strand, within HP15_2464at 2604.123 kb on - strand, within HP15_2464at 2604.328 kb on + strand, within HP15_2464at 2604.432 kb on - strand, within HP15_2464at 2604.452 kb on - strand, within HP15_2464at 2604.708 kb on + strand, within HP15_2464at 2604.726 kb on - strand, within HP15_2464at 2604.793 kb on - strandat 2604.884 kb on + strandat 2604.884 kb on + strandat 2604.892 kb on - strandat 2605.031 kb on + strandat 2605.091 kb on - strand, within HP15_2465at 2605.091 kb on - strand, within HP15_2465at 2605.156 kb on + strand, within HP15_2465at 2605.258 kb on + strand, within HP15_2465at 2605.266 kb on - strand, within HP15_2465at 2605.281 kb on + strand, within HP15_2465at 2605.373 kb on - strand, within HP15_2465at 2605.388 kb on + strand, within HP15_2465at 2605.416 kb on - strand, within HP15_2465at 2605.446 kb on + strand, within HP15_2465at 2605.463 kb on + strand, within HP15_2465

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM
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2,602,824 + HP15_2463 0.65 +0.9
2,602,831 - HP15_2463 0.65 +0.0
2,602,831 - HP15_2463 0.65 -2.2
2,602,831 - HP15_2463 0.65 -1.1
2,602,856 + HP15_2463 0.67 -0.2
2,603,031 + HP15_2463 0.77 +0.3
2,603,039 - HP15_2463 0.78 -0.7
2,603,157 - HP15_2463 0.85 +0.5
2,603,183 - HP15_2463 0.86 +1.2
2,603,183 - HP15_2463 0.86 +0.3
2,603,191 - HP15_2463 0.87 -0.7
2,603,202 - HP15_2463 0.87 +1.2
2,603,303 - -0.5
2,603,418 + +1.0
2,603,553 + -0.1
2,603,613 + -1.1
2,603,621 - -0.3
2,603,623 + +2.5
2,603,777 + -1.5
2,603,779 - -2.2
2,603,792 - +0.8
2,603,792 - -0.7
2,603,792 - +0.7
2,603,847 + +0.8
2,603,861 + +0.7
2,603,931 + HP15_2464 0.11 +0.8
2,603,965 - HP15_2464 0.14 -0.8
2,604,000 + HP15_2464 0.17 -1.1
2,604,110 - HP15_2464 0.28 +0.9
2,604,123 - HP15_2464 0.29 +0.9
2,604,328 + HP15_2464 0.50 +1.6
2,604,432 - HP15_2464 0.60 -1.4
2,604,452 - HP15_2464 0.62 +1.7
2,604,708 + HP15_2464 0.87 +0.6
2,604,726 - HP15_2464 0.89 +1.1
2,604,793 - -0.0
2,604,884 + +0.4
2,604,884 + +0.3
2,604,892 - +0.0
2,605,031 + -0.1
2,605,091 - HP15_2465 0.12 -0.8
2,605,091 - HP15_2465 0.12 -0.9
2,605,156 + HP15_2465 0.21 +0.6
2,605,258 + HP15_2465 0.35 +0.1
2,605,266 - HP15_2465 0.36 -1.4
2,605,281 + HP15_2465 0.38 -0.1
2,605,373 - HP15_2465 0.50 -1.1
2,605,388 + HP15_2465 0.52 -2.1
2,605,416 - HP15_2465 0.56 -0.3
2,605,446 + HP15_2465 0.60 -0.6
2,605,463 + HP15_2465 0.62 -1.1

Or see this region's nucleotide sequence