Experiment: m.b. Choline chloride 358.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2409 and HP15_2410 are separated by 2 nucleotides HP15_2410 and HP15_2411 are separated by 0 nucleotides HP15_2411 and HP15_2412 are separated by 3 nucleotides
HP15_2409: HP15_2409 - ATPase, type IV, pilus assembly, PilB, at 2,543,581 to 2,545,296
_2409
HP15_2410: HP15_2410 - type IV pilus biogenesis protein PilC, at 2,545,299 to 2,546,519
_2410
HP15_2411: HP15_2411 - type IV pilus prepilin peptidase PilD, at 2,546,520 to 2,547,395
_2411
HP15_2412: HP15_2412 - dephospho-CoA kinase, at 2,547,399 to 2,547,998
_2412
Position (kb)
2545
2546
2547 Strain fitness (log2 ratio)
-2
-1
0
1 at 2544.338 kb on - strand, within HP15_2409 at 2544.345 kb on + strand, within HP15_2409 at 2544.355 kb on - strand, within HP15_2409 at 2544.357 kb on + strand, within HP15_2409 at 2544.424 kb on + strand, within HP15_2409 at 2544.543 kb on + strand, within HP15_2409 at 2544.610 kb on - strand, within HP15_2409 at 2544.616 kb on + strand, within HP15_2409 at 2544.618 kb on + strand, within HP15_2409 at 2544.658 kb on - strand, within HP15_2409 at 2544.673 kb on - strand, within HP15_2409 at 2544.756 kb on - strand, within HP15_2409 at 2544.841 kb on - strand, within HP15_2409 at 2544.850 kb on + strand, within HP15_2409 at 2544.853 kb on - strand, within HP15_2409 at 2544.956 kb on - strand, within HP15_2409 at 2544.971 kb on - strand, within HP15_2409 at 2545.072 kb on - strand, within HP15_2409 at 2545.072 kb on - strand, within HP15_2409 at 2545.098 kb on - strand, within HP15_2409 at 2545.290 kb on + strand at 2545.298 kb on - strand at 2545.298 kb on - strand at 2545.298 kb on - strand at 2545.298 kb on - strand at 2545.390 kb on + strand at 2545.431 kb on + strand, within HP15_2410 at 2545.540 kb on - strand, within HP15_2410 at 2545.540 kb on - strand, within HP15_2410 at 2545.702 kb on - strand, within HP15_2410 at 2545.753 kb on + strand, within HP15_2410 at 2545.790 kb on + strand, within HP15_2410 at 2545.938 kb on + strand, within HP15_2410 at 2546.027 kb on + strand, within HP15_2410 at 2546.050 kb on - strand, within HP15_2410 at 2546.216 kb on - strand, within HP15_2410 at 2546.239 kb on - strand, within HP15_2410 at 2546.262 kb on - strand, within HP15_2410 at 2546.417 kb on - strand at 2546.442 kb on + strand at 2546.645 kb on + strand, within HP15_2411 at 2546.815 kb on - strand, within HP15_2411 at 2546.837 kb on - strand, within HP15_2411 at 2546.939 kb on + strand, within HP15_2411 at 2547.006 kb on - strand, within HP15_2411 at 2547.006 kb on - strand, within HP15_2411 at 2547.014 kb on + strand, within HP15_2411 at 2547.025 kb on + strand, within HP15_2411 at 2547.084 kb on - strand, within HP15_2411 at 2547.270 kb on - strand, within HP15_2411 at 2547.294 kb on - strand, within HP15_2411 at 2547.333 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM remove 2,544,338 - HP15_2409 0.44 +0.0 2,544,345 + HP15_2409 0.45 +0.2 2,544,355 - HP15_2409 0.45 +0.7 2,544,357 + HP15_2409 0.45 +0.1 2,544,424 + HP15_2409 0.49 +0.8 2,544,543 + HP15_2409 0.56 -1.6 2,544,610 - HP15_2409 0.60 +0.5 2,544,616 + HP15_2409 0.60 -0.1 2,544,618 + HP15_2409 0.60 +0.4 2,544,658 - HP15_2409 0.63 -0.0 2,544,673 - HP15_2409 0.64 -1.3 2,544,756 - HP15_2409 0.68 +0.3 2,544,841 - HP15_2409 0.73 +0.3 2,544,850 + HP15_2409 0.74 +0.5 2,544,853 - HP15_2409 0.74 +0.8 2,544,956 - HP15_2409 0.80 +0.5 2,544,971 - HP15_2409 0.81 +0.7 2,545,072 - HP15_2409 0.87 -0.1 2,545,072 - HP15_2409 0.87 +0.2 2,545,098 - HP15_2409 0.88 +0.3 2,545,290 + +0.5 2,545,298 - +0.3 2,545,298 - +0.3 2,545,298 - +0.7 2,545,298 - -1.3 2,545,390 + -2.5 2,545,431 + HP15_2410 0.11 +0.2 2,545,540 - HP15_2410 0.20 +0.2 2,545,540 - HP15_2410 0.20 -1.5 2,545,702 - HP15_2410 0.33 -0.5 2,545,753 + HP15_2410 0.37 -1.3 2,545,790 + HP15_2410 0.40 -0.1 2,545,938 + HP15_2410 0.52 -2.1 2,546,027 + HP15_2410 0.60 -1.4 2,546,050 - HP15_2410 0.62 -0.1 2,546,216 - HP15_2410 0.75 -2.2 2,546,239 - HP15_2410 0.77 -2.6 2,546,262 - HP15_2410 0.79 -1.5 2,546,417 - -0.1 2,546,442 + -0.7 2,546,645 + HP15_2411 0.14 -2.3 2,546,815 - HP15_2411 0.34 +0.2 2,546,837 - HP15_2411 0.36 +0.5 2,546,939 + HP15_2411 0.48 +0.1 2,547,006 - HP15_2411 0.55 -0.7 2,547,006 - HP15_2411 0.55 -1.2 2,547,014 + HP15_2411 0.56 -2.3 2,547,025 + HP15_2411 0.58 +0.3 2,547,084 - HP15_2411 0.64 -0.6 2,547,270 - HP15_2411 0.86 -0.7 2,547,294 - HP15_2411 0.88 -0.9 2,547,333 - -0.6
Or see this region's nucleotide sequence