Strain Fitness in Marinobacter adhaerens HP15 around HP15_2410

Experiment: m.b. Choline chloride 358.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2409 and HP15_2410 are separated by 2 nucleotidesHP15_2410 and HP15_2411 are separated by 0 nucleotidesHP15_2411 and HP15_2412 are separated by 3 nucleotides HP15_2409: HP15_2409 - ATPase, type IV, pilus assembly, PilB, at 2,543,581 to 2,545,296 _2409 HP15_2410: HP15_2410 - type IV pilus biogenesis protein PilC, at 2,545,299 to 2,546,519 _2410 HP15_2411: HP15_2411 - type IV pilus prepilin peptidase PilD, at 2,546,520 to 2,547,395 _2411 HP15_2412: HP15_2412 - dephospho-CoA kinase, at 2,547,399 to 2,547,998 _2412 Position (kb) 2545 2546 2547Strain fitness (log2 ratio) -2 -1 0 1at 2544.338 kb on - strand, within HP15_2409at 2544.345 kb on + strand, within HP15_2409at 2544.355 kb on - strand, within HP15_2409at 2544.357 kb on + strand, within HP15_2409at 2544.424 kb on + strand, within HP15_2409at 2544.543 kb on + strand, within HP15_2409at 2544.610 kb on - strand, within HP15_2409at 2544.616 kb on + strand, within HP15_2409at 2544.618 kb on + strand, within HP15_2409at 2544.658 kb on - strand, within HP15_2409at 2544.673 kb on - strand, within HP15_2409at 2544.756 kb on - strand, within HP15_2409at 2544.841 kb on - strand, within HP15_2409at 2544.850 kb on + strand, within HP15_2409at 2544.853 kb on - strand, within HP15_2409at 2544.956 kb on - strand, within HP15_2409at 2544.971 kb on - strand, within HP15_2409at 2545.072 kb on - strand, within HP15_2409at 2545.072 kb on - strand, within HP15_2409at 2545.098 kb on - strand, within HP15_2409at 2545.290 kb on + strandat 2545.298 kb on - strandat 2545.298 kb on - strandat 2545.298 kb on - strandat 2545.298 kb on - strandat 2545.390 kb on + strandat 2545.431 kb on + strand, within HP15_2410at 2545.540 kb on - strand, within HP15_2410at 2545.540 kb on - strand, within HP15_2410at 2545.702 kb on - strand, within HP15_2410at 2545.753 kb on + strand, within HP15_2410at 2545.790 kb on + strand, within HP15_2410at 2545.938 kb on + strand, within HP15_2410at 2546.027 kb on + strand, within HP15_2410at 2546.050 kb on - strand, within HP15_2410at 2546.216 kb on - strand, within HP15_2410at 2546.239 kb on - strand, within HP15_2410at 2546.262 kb on - strand, within HP15_2410at 2546.417 kb on - strandat 2546.442 kb on + strandat 2546.645 kb on + strand, within HP15_2411at 2546.815 kb on - strand, within HP15_2411at 2546.837 kb on - strand, within HP15_2411at 2546.939 kb on + strand, within HP15_2411at 2547.006 kb on - strand, within HP15_2411at 2547.006 kb on - strand, within HP15_2411at 2547.014 kb on + strand, within HP15_2411at 2547.025 kb on + strand, within HP15_2411at 2547.084 kb on - strand, within HP15_2411at 2547.270 kb on - strand, within HP15_2411at 2547.294 kb on - strand, within HP15_2411at 2547.333 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM
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2,544,338 - HP15_2409 0.44 +0.0
2,544,345 + HP15_2409 0.45 +0.2
2,544,355 - HP15_2409 0.45 +0.7
2,544,357 + HP15_2409 0.45 +0.1
2,544,424 + HP15_2409 0.49 +0.8
2,544,543 + HP15_2409 0.56 -1.6
2,544,610 - HP15_2409 0.60 +0.5
2,544,616 + HP15_2409 0.60 -0.1
2,544,618 + HP15_2409 0.60 +0.4
2,544,658 - HP15_2409 0.63 -0.0
2,544,673 - HP15_2409 0.64 -1.3
2,544,756 - HP15_2409 0.68 +0.3
2,544,841 - HP15_2409 0.73 +0.3
2,544,850 + HP15_2409 0.74 +0.5
2,544,853 - HP15_2409 0.74 +0.8
2,544,956 - HP15_2409 0.80 +0.5
2,544,971 - HP15_2409 0.81 +0.7
2,545,072 - HP15_2409 0.87 -0.1
2,545,072 - HP15_2409 0.87 +0.2
2,545,098 - HP15_2409 0.88 +0.3
2,545,290 + +0.5
2,545,298 - +0.3
2,545,298 - +0.3
2,545,298 - +0.7
2,545,298 - -1.3
2,545,390 + -2.5
2,545,431 + HP15_2410 0.11 +0.2
2,545,540 - HP15_2410 0.20 +0.2
2,545,540 - HP15_2410 0.20 -1.5
2,545,702 - HP15_2410 0.33 -0.5
2,545,753 + HP15_2410 0.37 -1.3
2,545,790 + HP15_2410 0.40 -0.1
2,545,938 + HP15_2410 0.52 -2.1
2,546,027 + HP15_2410 0.60 -1.4
2,546,050 - HP15_2410 0.62 -0.1
2,546,216 - HP15_2410 0.75 -2.2
2,546,239 - HP15_2410 0.77 -2.6
2,546,262 - HP15_2410 0.79 -1.5
2,546,417 - -0.1
2,546,442 + -0.7
2,546,645 + HP15_2411 0.14 -2.3
2,546,815 - HP15_2411 0.34 +0.2
2,546,837 - HP15_2411 0.36 +0.5
2,546,939 + HP15_2411 0.48 +0.1
2,547,006 - HP15_2411 0.55 -0.7
2,547,006 - HP15_2411 0.55 -1.2
2,547,014 + HP15_2411 0.56 -2.3
2,547,025 + HP15_2411 0.58 +0.3
2,547,084 - HP15_2411 0.64 -0.6
2,547,270 - HP15_2411 0.86 -0.7
2,547,294 - HP15_2411 0.88 -0.9
2,547,333 - -0.6

Or see this region's nucleotide sequence