Strain Fitness in Marinobacter adhaerens HP15 around HP15_2324

Experiment: m.b. Choline chloride 358.1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2323 and HP15_2324 overlap by 20 nucleotidesHP15_2324 and HP15_2325 overlap by 4 nucleotides HP15_2323: HP15_2323 - flagellum-specific ATP synthase FliI, at 2,441,571 to 2,442,965 _2323 HP15_2324: HP15_2324 - flagellar assembly protein H, at 2,442,946 to 2,443,842 _2324 HP15_2325: HP15_2325 - flagellar motor switch protein G, at 2,443,839 to 2,444,882 _2325 Position (kb) 2442 2443 2444Strain fitness (log2 ratio) -2 -1 0 1at 2442.027 kb on + strand, within HP15_2323at 2442.033 kb on - strand, within HP15_2323at 2442.033 kb on - strand, within HP15_2323at 2442.139 kb on + strand, within HP15_2323at 2442.147 kb on - strand, within HP15_2323at 2442.353 kb on + strand, within HP15_2323at 2442.361 kb on - strand, within HP15_2323at 2442.391 kb on - strand, within HP15_2323at 2442.396 kb on + strand, within HP15_2323at 2442.474 kb on + strand, within HP15_2323at 2442.493 kb on - strand, within HP15_2323at 2442.723 kb on - strand, within HP15_2323at 2442.764 kb on + strand, within HP15_2323at 2442.801 kb on + strand, within HP15_2323at 2442.812 kb on + strand, within HP15_2323at 2442.836 kb on + strandat 2442.844 kb on - strandat 2442.904 kb on - strandat 2442.961 kb on - strandat 2443.080 kb on - strand, within HP15_2324at 2443.134 kb on - strand, within HP15_2324at 2443.209 kb on + strand, within HP15_2324at 2443.281 kb on + strand, within HP15_2324at 2443.316 kb on + strand, within HP15_2324at 2443.380 kb on + strand, within HP15_2324at 2443.380 kb on + strand, within HP15_2324at 2443.385 kb on + strand, within HP15_2324at 2443.385 kb on + strand, within HP15_2324at 2443.402 kb on + strand, within HP15_2324at 2443.402 kb on + strand, within HP15_2324at 2443.410 kb on - strand, within HP15_2324at 2443.415 kb on - strand, within HP15_2324at 2443.432 kb on + strand, within HP15_2324at 2443.480 kb on + strand, within HP15_2324at 2443.502 kb on + strand, within HP15_2324at 2443.556 kb on + strand, within HP15_2324at 2443.556 kb on + strand, within HP15_2324at 2443.557 kb on + strand, within HP15_2324at 2443.597 kb on + strand, within HP15_2324at 2443.628 kb on + strand, within HP15_2324at 2443.650 kb on + strand, within HP15_2324at 2443.708 kb on - strand, within HP15_2324at 2443.717 kb on - strand, within HP15_2324at 2443.870 kb on - strandat 2443.896 kb on - strandat 2443.927 kb on + strandat 2443.955 kb on - strand, within HP15_2325at 2444.063 kb on + strand, within HP15_2325at 2444.071 kb on - strand, within HP15_2325at 2444.075 kb on + strand, within HP15_2325at 2444.113 kb on + strand, within HP15_2325at 2444.121 kb on - strand, within HP15_2325at 2444.136 kb on + strand, within HP15_2325at 2444.144 kb on - strand, within HP15_2325at 2444.691 kb on + strand, within HP15_2325at 2444.736 kb on - strand, within HP15_2325

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM
remove
2,442,027 + HP15_2323 0.33 -1.7
2,442,033 - HP15_2323 0.33 -1.3
2,442,033 - HP15_2323 0.33 -2.5
2,442,139 + HP15_2323 0.41 -1.7
2,442,147 - HP15_2323 0.41 -2.5
2,442,353 + HP15_2323 0.56 -1.2
2,442,361 - HP15_2323 0.57 -2.3
2,442,391 - HP15_2323 0.59 -1.3
2,442,396 + HP15_2323 0.59 -1.4
2,442,474 + HP15_2323 0.65 -2.3
2,442,493 - HP15_2323 0.66 -1.7
2,442,723 - HP15_2323 0.83 -0.5
2,442,764 + HP15_2323 0.86 -1.5
2,442,801 + HP15_2323 0.88 -1.0
2,442,812 + HP15_2323 0.89 -1.9
2,442,836 + -1.4
2,442,844 - -1.5
2,442,904 - -0.6
2,442,961 - +0.3
2,443,080 - HP15_2324 0.15 +0.6
2,443,134 - HP15_2324 0.21 -2.5
2,443,209 + HP15_2324 0.29 -1.5
2,443,281 + HP15_2324 0.37 -1.4
2,443,316 + HP15_2324 0.41 +1.3
2,443,380 + HP15_2324 0.48 -0.8
2,443,380 + HP15_2324 0.48 -0.4
2,443,385 + HP15_2324 0.49 -1.4
2,443,385 + HP15_2324 0.49 -1.2
2,443,402 + HP15_2324 0.51 -2.0
2,443,402 + HP15_2324 0.51 -1.8
2,443,410 - HP15_2324 0.52 +0.4
2,443,415 - HP15_2324 0.52 -2.0
2,443,432 + HP15_2324 0.54 -1.3
2,443,480 + HP15_2324 0.60 -1.2
2,443,502 + HP15_2324 0.62 -2.2
2,443,556 + HP15_2324 0.68 -0.7
2,443,556 + HP15_2324 0.68 -2.4
2,443,557 + HP15_2324 0.68 -1.4
2,443,597 + HP15_2324 0.73 -1.0
2,443,628 + HP15_2324 0.76 -1.3
2,443,650 + HP15_2324 0.78 -2.6
2,443,708 - HP15_2324 0.85 -1.2
2,443,717 - HP15_2324 0.86 -1.4
2,443,870 - -0.1
2,443,896 - -0.3
2,443,927 + -1.5
2,443,955 - HP15_2325 0.11 -2.6
2,444,063 + HP15_2325 0.21 -0.5
2,444,071 - HP15_2325 0.22 -2.2
2,444,075 + HP15_2325 0.23 -1.8
2,444,113 + HP15_2325 0.26 -2.2
2,444,121 - HP15_2325 0.27 -1.0
2,444,136 + HP15_2325 0.28 -2.5
2,444,144 - HP15_2325 0.29 -1.6
2,444,691 + HP15_2325 0.82 -2.2
2,444,736 - HP15_2325 0.86 -2.5

Or see this region's nucleotide sequence