Experiment: m.b. Choline chloride 358.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2312 and HP15_2313 are separated by 4 nucleotides HP15_2313 and HP15_2314 are separated by 1 nucleotides HP15_2314 and HP15_2315 overlap by 8 nucleotides HP15_2315 and HP15_2316 are separated by 36 nucleotides HP15_2316 and HP15_2317 are separated by 165 nucleotides
HP15_2312: HP15_2312 - flagellar biosynthesis protein FliP, at 2,433,808 to 2,434,584
_2312
HP15_2313: HP15_2313 - flagellar biosynthesis protein, FliO, at 2,434,589 to 2,435,038
_2313
HP15_2314: HP15_2314 - flagellar motor switch protein FliN-like protein, at 2,435,040 to 2,435,531
_2314
HP15_2315: HP15_2315 - flagellar motor switch protein FliM-like protein, at 2,435,524 to 2,436,522
_2315
HP15_2316: HP15_2316 - flagellar basal body-associated protein FliL, at 2,436,559 to 2,437,068
_2316
HP15_2317: HP15_2317 - flagellar hook-length control protein, at 2,437,234 to 2,438,424
_2317
Position (kb)
2435
2436
2437 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2434.542 kb on - strand at 2434.587 kb on + strand at 2434.611 kb on + strand at 2434.611 kb on + strand at 2434.705 kb on - strand, within HP15_2313 at 2434.707 kb on - strand, within HP15_2313 at 2434.731 kb on - strand, within HP15_2313 at 2434.763 kb on - strand, within HP15_2313 at 2434.860 kb on - strand, within HP15_2313 at 2434.903 kb on + strand, within HP15_2313 at 2434.937 kb on - strand, within HP15_2313 at 2435.084 kb on - strand at 2435.141 kb on + strand, within HP15_2314 at 2435.154 kb on - strand, within HP15_2314 at 2435.295 kb on + strand, within HP15_2314 at 2435.314 kb on + strand, within HP15_2314 at 2435.322 kb on - strand, within HP15_2314 at 2435.337 kb on + strand, within HP15_2314 at 2435.627 kb on - strand, within HP15_2315 at 2435.750 kb on - strand, within HP15_2315 at 2435.768 kb on + strand, within HP15_2315 at 2435.769 kb on + strand, within HP15_2315 at 2435.878 kb on - strand, within HP15_2315 at 2436.063 kb on - strand, within HP15_2315 at 2436.219 kb on + strand, within HP15_2315 at 2436.237 kb on + strand, within HP15_2315 at 2436.237 kb on + strand, within HP15_2315 at 2436.363 kb on + strand, within HP15_2315 at 2436.444 kb on + strand at 2436.452 kb on - strand at 2436.478 kb on + strand at 2436.484 kb on - strand at 2436.531 kb on - strand at 2436.544 kb on + strand at 2436.559 kb on + strand at 2436.651 kb on + strand, within HP15_2316 at 2436.703 kb on + strand, within HP15_2316 at 2436.737 kb on + strand, within HP15_2316 at 2436.791 kb on + strand, within HP15_2316 at 2436.858 kb on + strand, within HP15_2316 at 2436.866 kb on - strand, within HP15_2316 at 2436.970 kb on - strand, within HP15_2316 at 2437.277 kb on - strand at 2437.277 kb on - strand at 2437.406 kb on - strand, within HP15_2317 at 2437.439 kb on + strand, within HP15_2317
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM remove 2,434,542 - -1.1 2,434,587 + -1.5 2,434,611 + -1.2 2,434,611 + -3.8 2,434,705 - HP15_2313 0.26 -1.1 2,434,707 - HP15_2313 0.26 -1.3 2,434,731 - HP15_2313 0.32 -1.5 2,434,763 - HP15_2313 0.39 -1.5 2,434,860 - HP15_2313 0.60 -1.3 2,434,903 + HP15_2313 0.70 -0.4 2,434,937 - HP15_2313 0.77 -0.3 2,435,084 - -1.1 2,435,141 + HP15_2314 0.21 -2.2 2,435,154 - HP15_2314 0.23 -2.5 2,435,295 + HP15_2314 0.52 -1.5 2,435,314 + HP15_2314 0.56 -1.5 2,435,322 - HP15_2314 0.57 -1.1 2,435,337 + HP15_2314 0.60 -1.7 2,435,627 - HP15_2315 0.10 -1.2 2,435,750 - HP15_2315 0.23 -1.3 2,435,768 + HP15_2315 0.24 -1.5 2,435,769 + HP15_2315 0.25 -2.0 2,435,878 - HP15_2315 0.35 -0.0 2,436,063 - HP15_2315 0.54 -1.8 2,436,219 + HP15_2315 0.70 -1.7 2,436,237 + HP15_2315 0.71 -2.0 2,436,237 + HP15_2315 0.71 -1.5 2,436,363 + HP15_2315 0.84 -1.2 2,436,444 + -1.5 2,436,452 - -1.3 2,436,478 + -2.8 2,436,484 - -2.2 2,436,531 - +0.2 2,436,544 + -2.0 2,436,559 + -1.3 2,436,651 + HP15_2316 0.18 +0.2 2,436,703 + HP15_2316 0.28 -0.8 2,436,737 + HP15_2316 0.35 -0.9 2,436,791 + HP15_2316 0.45 +0.5 2,436,858 + HP15_2316 0.59 -0.9 2,436,866 - HP15_2316 0.60 -0.7 2,436,970 - HP15_2316 0.81 +0.6 2,437,277 - -1.1 2,437,277 - -1.2 2,437,406 - HP15_2317 0.14 -1.5 2,437,439 + HP15_2317 0.17 -0.5
Or see this region's nucleotide sequence