Experiment: m.b. Choline chloride 358.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1864 and HP15_1865 are separated by 194 nucleotides HP15_1865 and HP15_1866 are separated by 47 nucleotides HP15_1866 and HP15_1867 are separated by 88 nucleotides HP15_1867 and HP15_1868 are separated by 44 nucleotides
HP15_1864: HP15_1864 - acyl-CoA synthase, at 1,969,999 to 1,971,681
_1864
HP15_1865: HP15_1865 - MaoC domain protein dehydratase, at 1,971,876 to 1,972,361
_1865
HP15_1866: HP15_1866 - conserved hypothetical protein, at 1,972,409 to 1,973,308
_1866
HP15_1867: HP15_1867 - biopolymer transport protein, at 1,973,397 to 1,973,837
_1867
HP15_1868: HP15_1868 - biopolymer transport protein ExbD/TolR, at 1,973,882 to 1,974,346
_1868
Position (kb)
1972
1973
1974 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1971.437 kb on + strand, within HP15_1864 at 1971.460 kb on - strand, within HP15_1864 at 1971.610 kb on + strand at 1971.824 kb on - strand at 1971.852 kb on + strand at 1971.854 kb on + strand at 1971.880 kb on + strand at 1971.890 kb on + strand at 1971.955 kb on + strand, within HP15_1865 at 1971.955 kb on + strand, within HP15_1865 at 1971.963 kb on - strand, within HP15_1865 at 1971.963 kb on - strand, within HP15_1865 at 1971.963 kb on - strand, within HP15_1865 at 1971.963 kb on - strand, within HP15_1865 at 1971.980 kb on + strand, within HP15_1865 at 1972.076 kb on - strand, within HP15_1865 at 1972.140 kb on + strand, within HP15_1865 at 1972.143 kb on - strand, within HP15_1865 at 1972.520 kb on + strand, within HP15_1866 at 1972.590 kb on + strand, within HP15_1866 at 1972.711 kb on - strand, within HP15_1866 at 1972.775 kb on - strand, within HP15_1866 at 1972.865 kb on - strand, within HP15_1866 at 1972.926 kb on + strand, within HP15_1866 at 1973.112 kb on - strand, within HP15_1866 at 1973.215 kb on + strand, within HP15_1866 at 1973.289 kb on + strand at 1973.347 kb on + strand at 1973.347 kb on + strand at 1973.347 kb on + strand at 1973.427 kb on + strand at 1973.460 kb on + strand, within HP15_1867 at 1973.468 kb on - strand, within HP15_1867 at 1973.468 kb on - strand, within HP15_1867 at 1973.614 kb on + strand, within HP15_1867 at 1973.632 kb on + strand, within HP15_1867 at 1973.806 kb on - strand at 1973.821 kb on + strand at 1973.822 kb on - strand at 1973.886 kb on - strand at 1973.886 kb on - strand at 1973.937 kb on + strand, within HP15_1868 at 1973.976 kb on - strand, within HP15_1868 at 1974.037 kb on + strand, within HP15_1868 at 1974.045 kb on - strand, within HP15_1868 at 1974.117 kb on + strand, within HP15_1868 at 1974.130 kb on - strand, within HP15_1868
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM remove 1,971,437 + HP15_1864 0.85 -2.6 1,971,460 - HP15_1864 0.87 -2.6 1,971,610 + -4.5 1,971,824 - +1.3 1,971,852 + +0.4 1,971,854 + -1.6 1,971,880 + +0.0 1,971,890 + -3.0 1,971,955 + HP15_1865 0.16 -1.5 1,971,955 + HP15_1865 0.16 -2.2 1,971,963 - HP15_1865 0.18 -0.6 1,971,963 - HP15_1865 0.18 -1.8 1,971,963 - HP15_1865 0.18 -1.6 1,971,963 - HP15_1865 0.18 -0.6 1,971,980 + HP15_1865 0.21 -1.9 1,972,076 - HP15_1865 0.41 +0.7 1,972,140 + HP15_1865 0.54 -1.6 1,972,143 - HP15_1865 0.55 -0.4 1,972,520 + HP15_1866 0.12 +0.3 1,972,590 + HP15_1866 0.20 -1.9 1,972,711 - HP15_1866 0.34 -1.8 1,972,775 - HP15_1866 0.41 +0.4 1,972,865 - HP15_1866 0.51 -0.3 1,972,926 + HP15_1866 0.57 -0.4 1,973,112 - HP15_1866 0.78 +0.4 1,973,215 + HP15_1866 0.90 +0.6 1,973,289 + +1.0 1,973,347 + +0.6 1,973,347 + +0.2 1,973,347 + +0.4 1,973,427 + +0.1 1,973,460 + HP15_1867 0.14 -0.9 1,973,468 - HP15_1867 0.16 +0.8 1,973,468 - HP15_1867 0.16 +0.9 1,973,614 + HP15_1867 0.49 +1.4 1,973,632 + HP15_1867 0.53 +1.0 1,973,806 - -0.0 1,973,821 + +0.8 1,973,822 - -2.3 1,973,886 - -1.9 1,973,886 - -1.5 1,973,937 + HP15_1868 0.12 +0.4 1,973,976 - HP15_1868 0.20 -0.0 1,974,037 + HP15_1868 0.33 +0.6 1,974,045 - HP15_1868 0.35 -1.8 1,974,117 + HP15_1868 0.51 -0.1 1,974,130 - HP15_1868 0.53 -0.6
Or see this region's nucleotide sequence