Experiment: m.b. Choline chloride 358.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1820 and HP15_1821 are separated by 26 nucleotides HP15_1821 and HP15_1822 are separated by 34 nucleotides HP15_1822 and HP15_1823 are separated by 91 nucleotides
HP15_1820: HP15_1820 - methionine gamma-lyase, at 1,916,591 to 1,917,832
_1820
HP15_1821: HP15_1821 - amidophosphoribosyltransferase, at 1,917,859 to 1,919,385
_1821
HP15_1822: HP15_1822 - CvpA family protein, at 1,919,420 to 1,919,989
_1822
HP15_1823: HP15_1823 - sporulation domain protein, at 1,920,081 to 1,920,752
_1823
Position (kb)
1917
1918
1919
1920 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1917.026 kb on + strand, within HP15_1820 at 1917.027 kb on - strand, within HP15_1820 at 1917.095 kb on + strand, within HP15_1820 at 1917.147 kb on + strand, within HP15_1820 at 1917.205 kb on + strand, within HP15_1820 at 1917.213 kb on - strand, within HP15_1820 at 1917.497 kb on + strand, within HP15_1820 at 1917.604 kb on - strand, within HP15_1820 at 1917.673 kb on - strand, within HP15_1820 at 1917.680 kb on + strand, within HP15_1820 at 1917.688 kb on - strand, within HP15_1820 at 1917.735 kb on + strand at 1919.439 kb on + strand at 1919.533 kb on + strand, within HP15_1822 at 1919.551 kb on - strand, within HP15_1822 at 1919.825 kb on - strand, within HP15_1822 at 1919.863 kb on + strand, within HP15_1822 at 1919.871 kb on - strand, within HP15_1822 at 1920.134 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM remove 1,917,026 + HP15_1820 0.35 -0.8 1,917,027 - HP15_1820 0.35 +0.8 1,917,095 + HP15_1820 0.41 +0.7 1,917,147 + HP15_1820 0.45 -1.3 1,917,205 + HP15_1820 0.49 -2.2 1,917,213 - HP15_1820 0.50 +0.4 1,917,497 + HP15_1820 0.73 -2.3 1,917,604 - HP15_1820 0.82 -0.0 1,917,673 - HP15_1820 0.87 -0.0 1,917,680 + HP15_1820 0.88 -1.1 1,917,688 - HP15_1820 0.88 +0.2 1,917,735 + -0.1 1,919,439 + -2.2 1,919,533 + HP15_1822 0.20 -0.8 1,919,551 - HP15_1822 0.23 -1.5 1,919,825 - HP15_1822 0.71 -1.4 1,919,863 + HP15_1822 0.78 -1.6 1,919,871 - HP15_1822 0.79 -2.2 1,920,134 - -3.4
Or see this region's nucleotide sequence