Experiment: m.b. Choline chloride 358.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1775 and HP15_1776 are separated by 81 nucleotides HP15_1776 and HP15_1777 are separated by 18 nucleotides HP15_1777 and HP15_1778 are separated by 9 nucleotides HP15_1778 and HP15_1779 are separated by 346 nucleotides
HP15_1775: HP15_1775 - conserved hypothetical protein, at 1,872,095 to 1,872,808
_1775
HP15_1776: HP15_1776 - exonuclease III, at 1,872,890 to 1,873,702
_1776
HP15_1777: HP15_1777 - transcriptional regulator, TetR family, at 1,873,721 to 1,874,350
_1777
HP15_1778: HP15_1778 - poly(hydroxyalkanoate) granule-associated protein, at 1,874,360 to 1,874,773
_1778
HP15_1779: HP15_1779 - protein of unknown function, YeeE/YedE, at 1,875,120 to 1,875,557
_1779
Position (kb)
1873
1874
1875 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1873.080 kb on + strand, within HP15_1776 at 1873.139 kb on + strand, within HP15_1776 at 1873.172 kb on + strand, within HP15_1776 at 1873.280 kb on + strand, within HP15_1776 at 1873.336 kb on - strand, within HP15_1776 at 1873.532 kb on - strand, within HP15_1776 at 1873.558 kb on + strand, within HP15_1776 at 1873.580 kb on + strand, within HP15_1776 at 1873.600 kb on - strand, within HP15_1776 at 1873.631 kb on - strand at 1873.771 kb on + strand at 1873.779 kb on - strand at 1873.886 kb on + strand, within HP15_1777 at 1874.262 kb on + strand, within HP15_1777 at 1874.290 kb on + strand at 1874.295 kb on + strand at 1874.622 kb on - strand, within HP15_1778 at 1874.699 kb on - strand, within HP15_1778 at 1874.853 kb on - strand at 1874.874 kb on + strand at 1874.882 kb on - strand at 1874.882 kb on - strand at 1875.159 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM remove 1,873,080 + HP15_1776 0.23 -0.4 1,873,139 + HP15_1776 0.31 +0.3 1,873,172 + HP15_1776 0.35 +0.7 1,873,280 + HP15_1776 0.48 -0.6 1,873,336 - HP15_1776 0.55 +0.3 1,873,532 - HP15_1776 0.79 -1.4 1,873,558 + HP15_1776 0.82 -0.6 1,873,580 + HP15_1776 0.85 -2.6 1,873,600 - HP15_1776 0.87 +0.7 1,873,631 - -0.2 1,873,771 + -0.6 1,873,779 - +0.1 1,873,886 + HP15_1777 0.26 +0.0 1,874,262 + HP15_1777 0.86 -2.9 1,874,290 + -1.2 1,874,295 + +0.0 1,874,622 - HP15_1778 0.63 +0.4 1,874,699 - HP15_1778 0.82 -1.9 1,874,853 - -1.1 1,874,874 + -1.9 1,874,882 - -0.7 1,874,882 - +0.5 1,875,159 + -1.6
Or see this region's nucleotide sequence