Experiment: m.b. Choline chloride 358.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1688 and HP15_1689 overlap by 4 nucleotides HP15_1689 and HP15_1690 are separated by 27 nucleotides
HP15_1688: HP15_1688 - iron-sulfur cluster-binding protein, at 1,773,535 to 1,774,926
_1688
HP15_1689: HP15_1689 - sensory box/GGDEF family protein, at 1,774,923 to 1,776,980
_1689
HP15_1690: HP15_1690 - glutathione-regulated potassium-efflux system protein KefC, at 1,777,008 to 1,778,888
_1690
Position (kb)
1774
1775
1776
1777 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1774.141 kb on + strand, within HP15_1688 at 1774.149 kb on - strand, within HP15_1688 at 1774.156 kb on + strand, within HP15_1688 at 1774.156 kb on + strand, within HP15_1688 at 1774.221 kb on + strand, within HP15_1688 at 1774.221 kb on + strand, within HP15_1688 at 1774.266 kb on + strand, within HP15_1688 at 1774.274 kb on - strand, within HP15_1688 at 1774.281 kb on + strand, within HP15_1688 at 1774.336 kb on - strand, within HP15_1688 at 1774.340 kb on + strand, within HP15_1688 at 1774.480 kb on - strand, within HP15_1688 at 1774.496 kb on + strand, within HP15_1688 at 1774.506 kb on + strand, within HP15_1688 at 1774.569 kb on + strand, within HP15_1688 at 1774.730 kb on - strand, within HP15_1688 at 1774.744 kb on - strand, within HP15_1688 at 1774.754 kb on - strand, within HP15_1688 at 1774.955 kb on - strand at 1775.058 kb on + strand at 1775.066 kb on - strand at 1775.066 kb on - strand at 1775.106 kb on - strand at 1775.181 kb on - strand, within HP15_1689 at 1775.286 kb on + strand, within HP15_1689 at 1775.305 kb on - strand, within HP15_1689 at 1775.354 kb on + strand, within HP15_1689 at 1775.577 kb on - strand, within HP15_1689 at 1775.597 kb on + strand, within HP15_1689 at 1775.620 kb on - strand, within HP15_1689 at 1775.653 kb on + strand, within HP15_1689 at 1775.692 kb on + strand, within HP15_1689 at 1775.713 kb on + strand, within HP15_1689 at 1775.811 kb on - strand, within HP15_1689 at 1775.813 kb on + strand, within HP15_1689 at 1775.909 kb on - strand, within HP15_1689 at 1775.975 kb on + strand, within HP15_1689 at 1776.022 kb on - strand, within HP15_1689 at 1776.047 kb on - strand, within HP15_1689 at 1776.101 kb on + strand, within HP15_1689 at 1776.120 kb on + strand, within HP15_1689 at 1776.130 kb on + strand, within HP15_1689 at 1776.130 kb on + strand, within HP15_1689 at 1776.219 kb on - strand, within HP15_1689 at 1776.226 kb on + strand, within HP15_1689 at 1776.228 kb on + strand, within HP15_1689 at 1776.474 kb on + strand, within HP15_1689 at 1776.518 kb on - strand, within HP15_1689 at 1776.528 kb on + strand, within HP15_1689 at 1776.700 kb on + strand, within HP15_1689 at 1776.850 kb on + strand at 1776.850 kb on + strand at 1776.850 kb on + strand at 1776.858 kb on - strand at 1776.860 kb on + strand at 1776.975 kb on - strand at 1777.086 kb on - strand at 1777.162 kb on + strand at 1777.206 kb on + strand, within HP15_1690 at 1777.215 kb on + strand, within HP15_1690 at 1777.336 kb on - strand, within HP15_1690 at 1777.359 kb on + strand, within HP15_1690 at 1777.364 kb on + strand, within HP15_1690 at 1777.557 kb on + strand, within HP15_1690 at 1777.701 kb on + strand, within HP15_1690 at 1777.806 kb on + strand, within HP15_1690 at 1777.806 kb on + strand, within HP15_1690 at 1777.806 kb on + strand, within HP15_1690 at 1777.814 kb on - strand, within HP15_1690 at 1777.814 kb on - strand, within HP15_1690 at 1777.814 kb on - strand, within HP15_1690 at 1777.814 kb on - strand, within HP15_1690 at 1777.824 kb on - strand, within HP15_1690 at 1777.849 kb on + strand, within HP15_1690
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM remove 1,774,141 + HP15_1688 0.44 +0.1 1,774,149 - HP15_1688 0.44 -0.0 1,774,156 + HP15_1688 0.45 +0.7 1,774,156 + HP15_1688 0.45 +1.0 1,774,221 + HP15_1688 0.49 -1.6 1,774,221 + HP15_1688 0.49 -0.1 1,774,266 + HP15_1688 0.53 +0.2 1,774,274 - HP15_1688 0.53 -2.8 1,774,281 + HP15_1688 0.54 +1.1 1,774,336 - HP15_1688 0.58 +0.5 1,774,340 + HP15_1688 0.58 +0.1 1,774,480 - HP15_1688 0.68 +0.5 1,774,496 + HP15_1688 0.69 -0.8 1,774,506 + HP15_1688 0.70 -1.6 1,774,569 + HP15_1688 0.74 +0.9 1,774,730 - HP15_1688 0.86 +0.4 1,774,744 - HP15_1688 0.87 -0.1 1,774,754 - HP15_1688 0.88 +0.1 1,774,955 - +0.3 1,775,058 + -1.4 1,775,066 - -0.6 1,775,066 - -0.6 1,775,106 - +0.0 1,775,181 - HP15_1689 0.13 +2.0 1,775,286 + HP15_1689 0.18 -0.0 1,775,305 - HP15_1689 0.19 +0.3 1,775,354 + HP15_1689 0.21 +0.1 1,775,577 - HP15_1689 0.32 -0.4 1,775,597 + HP15_1689 0.33 -0.7 1,775,620 - HP15_1689 0.34 -0.9 1,775,653 + HP15_1689 0.35 +0.1 1,775,692 + HP15_1689 0.37 +0.1 1,775,713 + HP15_1689 0.38 -0.1 1,775,811 - HP15_1689 0.43 -0.4 1,775,813 + HP15_1689 0.43 -2.0 1,775,909 - HP15_1689 0.48 -0.8 1,775,975 + HP15_1689 0.51 -0.0 1,776,022 - HP15_1689 0.53 -1.6 1,776,047 - HP15_1689 0.55 -1.9 1,776,101 + HP15_1689 0.57 -2.4 1,776,120 + HP15_1689 0.58 -1.2 1,776,130 + HP15_1689 0.59 +0.2 1,776,130 + HP15_1689 0.59 -0.6 1,776,219 - HP15_1689 0.63 -0.4 1,776,226 + HP15_1689 0.63 -1.4 1,776,228 + HP15_1689 0.63 -0.1 1,776,474 + HP15_1689 0.75 +0.3 1,776,518 - HP15_1689 0.78 -1.6 1,776,528 + HP15_1689 0.78 +0.5 1,776,700 + HP15_1689 0.86 +0.3 1,776,850 + -0.1 1,776,850 + -0.2 1,776,850 + -0.1 1,776,858 - +0.4 1,776,860 + -0.8 1,776,975 - +0.6 1,777,086 - +0.1 1,777,162 + -0.8 1,777,206 + HP15_1690 0.11 -1.8 1,777,215 + HP15_1690 0.11 +0.4 1,777,336 - HP15_1690 0.17 +0.6 1,777,359 + HP15_1690 0.19 -0.4 1,777,364 + HP15_1690 0.19 -0.2 1,777,557 + HP15_1690 0.29 -0.3 1,777,701 + HP15_1690 0.37 +0.3 1,777,806 + HP15_1690 0.42 -0.4 1,777,806 + HP15_1690 0.42 -1.8 1,777,806 + HP15_1690 0.42 -1.2 1,777,814 - HP15_1690 0.43 +0.7 1,777,814 - HP15_1690 0.43 -0.8 1,777,814 - HP15_1690 0.43 -1.8 1,777,814 - HP15_1690 0.43 -2.4 1,777,824 - HP15_1690 0.43 -1.0 1,777,849 + HP15_1690 0.45 +0.5
Or see this region's nucleotide sequence