Experiment: m.b. Choline chloride 358.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1568 and HP15_1569 are separated by 7 nucleotides HP15_1569 and HP15_1570 are separated by 582 nucleotides
HP15_1568: HP15_1568 - excinuclease ABC subunit C, at 1,647,623 to 1,649,485
_1568
HP15_1569: HP15_1569 - CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase, at 1,649,493 to 1,650,071
_1569
HP15_1570: HP15_1570 - mammalian cell entry related domain protein, at 1,650,654 to 1,651,592
_1570
Position (kb)
1649
1650
1651 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1648.540 kb on + strand, within HP15_1568 at 1648.600 kb on + strand, within HP15_1568 at 1648.637 kb on + strand, within HP15_1568 at 1649.152 kb on - strand, within HP15_1568 at 1649.395 kb on + strand at 1650.070 kb on + strand at 1650.073 kb on - strand at 1650.120 kb on - strand at 1650.140 kb on + strand at 1650.192 kb on + strand at 1650.199 kb on - strand at 1650.286 kb on + strand at 1650.359 kb on + strand at 1650.373 kb on + strand at 1650.397 kb on - strand at 1650.422 kb on + strand at 1650.557 kb on - strand at 1650.604 kb on + strand at 1650.604 kb on + strand at 1650.609 kb on + strand at 1650.746 kb on + strand at 1650.761 kb on + strand, within HP15_1570 at 1650.790 kb on - strand, within HP15_1570 at 1650.848 kb on + strand, within HP15_1570 at 1650.853 kb on + strand, within HP15_1570 at 1651.006 kb on + strand, within HP15_1570
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM remove 1,648,540 + HP15_1568 0.49 -1.0 1,648,600 + HP15_1568 0.52 -0.0 1,648,637 + HP15_1568 0.54 -0.7 1,649,152 - HP15_1568 0.82 +2.8 1,649,395 + -2.0 1,650,070 + -1.6 1,650,073 - -1.4 1,650,120 - +0.2 1,650,140 + +0.2 1,650,192 + -1.2 1,650,199 - -1.2 1,650,286 + +2.0 1,650,359 + +0.1 1,650,373 + +0.1 1,650,397 - -3.3 1,650,422 + -1.2 1,650,557 - +1.1 1,650,604 + +0.3 1,650,604 + +0.3 1,650,609 + +2.1 1,650,746 + +0.3 1,650,761 + HP15_1570 0.11 -0.2 1,650,790 - HP15_1570 0.14 +0.4 1,650,848 + HP15_1570 0.21 -0.0 1,650,853 + HP15_1570 0.21 -1.1 1,651,006 + HP15_1570 0.37 +0.2
Or see this region's nucleotide sequence