Strain Fitness in Marinobacter adhaerens HP15 around HP15_1569

Experiment: m.b. Choline chloride 358.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1568 and HP15_1569 are separated by 7 nucleotidesHP15_1569 and HP15_1570 are separated by 582 nucleotides HP15_1568: HP15_1568 - excinuclease ABC subunit C, at 1,647,623 to 1,649,485 _1568 HP15_1569: HP15_1569 - CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase, at 1,649,493 to 1,650,071 _1569 HP15_1570: HP15_1570 - mammalian cell entry related domain protein, at 1,650,654 to 1,651,592 _1570 Position (kb) 1649 1650 1651Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1648.540 kb on + strand, within HP15_1568at 1648.600 kb on + strand, within HP15_1568at 1648.637 kb on + strand, within HP15_1568at 1649.152 kb on - strand, within HP15_1568at 1649.395 kb on + strandat 1650.070 kb on + strandat 1650.073 kb on - strandat 1650.120 kb on - strandat 1650.140 kb on + strandat 1650.192 kb on + strandat 1650.199 kb on - strandat 1650.286 kb on + strandat 1650.359 kb on + strandat 1650.373 kb on + strandat 1650.397 kb on - strandat 1650.422 kb on + strandat 1650.557 kb on - strandat 1650.604 kb on + strandat 1650.604 kb on + strandat 1650.609 kb on + strandat 1650.746 kb on + strandat 1650.761 kb on + strand, within HP15_1570at 1650.790 kb on - strand, within HP15_1570at 1650.848 kb on + strand, within HP15_1570at 1650.853 kb on + strand, within HP15_1570at 1651.006 kb on + strand, within HP15_1570

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM
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1,648,540 + HP15_1568 0.49 -1.0
1,648,600 + HP15_1568 0.52 -0.0
1,648,637 + HP15_1568 0.54 -0.7
1,649,152 - HP15_1568 0.82 +2.8
1,649,395 + -2.0
1,650,070 + -1.6
1,650,073 - -1.4
1,650,120 - +0.2
1,650,140 + +0.2
1,650,192 + -1.2
1,650,199 - -1.2
1,650,286 + +2.0
1,650,359 + +0.1
1,650,373 + +0.1
1,650,397 - -3.3
1,650,422 + -1.2
1,650,557 - +1.1
1,650,604 + +0.3
1,650,604 + +0.3
1,650,609 + +2.1
1,650,746 + +0.3
1,650,761 + HP15_1570 0.11 -0.2
1,650,790 - HP15_1570 0.14 +0.4
1,650,848 + HP15_1570 0.21 -0.0
1,650,853 + HP15_1570 0.21 -1.1
1,651,006 + HP15_1570 0.37 +0.2

Or see this region's nucleotide sequence