Strain Fitness in Marinobacter adhaerens HP15 around HP15_1535

Experiment: m.b. Choline chloride 358.1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1534 and HP15_1535 are separated by 73 nucleotidesHP15_1535 and HP15_1536 overlap by 4 nucleotidesHP15_1536 and HP15_1537 overlap by 2 nucleotides HP15_1534: HP15_1534 - cell division protein ZipA-like protein, at 1,618,107 to 1,619,120 _1534 HP15_1535: HP15_1535 - NAD-dependent DNA ligase, at 1,619,194 to 1,621,230 _1535 HP15_1536: HP15_1536 - hypothetical protein, at 1,621,227 to 1,621,376 _1536 HP15_1537: HP15_1537 - conserved hypothetical protein, at 1,621,375 to 1,622,631 _1537 Position (kb) 1619 1620 1621 1622Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1618.839 kb on + strand, within HP15_1534at 1618.893 kb on + strand, within HP15_1534at 1619.018 kb on + strand, within HP15_1534at 1621.284 kb on - strand, within HP15_1536at 1621.542 kb on + strand, within HP15_1537at 1621.665 kb on - strand, within HP15_1537at 1621.756 kb on - strand, within HP15_1537at 1621.825 kb on + strand, within HP15_1537at 1622.077 kb on + strand, within HP15_1537at 1622.077 kb on + strand, within HP15_1537at 1622.156 kb on + strand, within HP15_1537at 1622.193 kb on + strand, within HP15_1537at 1622.193 kb on + strand, within HP15_1537at 1622.193 kb on + strand, within HP15_1537

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM
remove
1,618,839 + HP15_1534 0.72 -3.8
1,618,893 + HP15_1534 0.78 +0.4
1,619,018 + HP15_1534 0.90 -4.0
1,621,284 - HP15_1536 0.38 +0.0
1,621,542 + HP15_1537 0.13 +0.1
1,621,665 - HP15_1537 0.23 -0.0
1,621,756 - HP15_1537 0.30 +1.1
1,621,825 + HP15_1537 0.36 -0.2
1,622,077 + HP15_1537 0.56 -1.3
1,622,077 + HP15_1537 0.56 +0.5
1,622,156 + HP15_1537 0.62 +1.9
1,622,193 + HP15_1537 0.65 +0.7
1,622,193 + HP15_1537 0.65 +1.6
1,622,193 + HP15_1537 0.65 -2.2

Or see this region's nucleotide sequence