Strain Fitness in Marinobacter adhaerens HP15 around HP15_1477

Experiment: m.b. Choline chloride 358.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1476 and HP15_1477 are separated by 18 nucleotidesHP15_1477 and HP15_tRNA27 are separated by 82 nucleotidesHP15_tRNA27 and HP15_1478 are separated by 35 nucleotides HP15_1476: HP15_1476 - flagellar hook-associated protein FlgK, at 1,550,610 to 1,552,640 _1476 HP15_1477: HP15_1477 - flagellar hook-associated protein FlgL, at 1,552,659 to 1,553,882 _1477 HP15_tRNA27: HP15_tRNA27 - tRNA-Leu, at 1,553,965 to 1,554,051 _tRNA27 HP15_1478: HP15_1478 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 1,554,087 to 1,555,190 _1478 Position (kb) 1552 1553 1554Strain fitness (log2 ratio) -3 -2 -1 0 1at 1551.707 kb on + strand, within HP15_1476at 1551.707 kb on + strand, within HP15_1476at 1551.707 kb on + strand, within HP15_1476at 1551.717 kb on + strand, within HP15_1476at 1551.865 kb on - strand, within HP15_1476at 1552.138 kb on + strand, within HP15_1476at 1552.160 kb on + strand, within HP15_1476at 1552.241 kb on + strand, within HP15_1476at 1552.241 kb on + strand, within HP15_1476at 1552.241 kb on + strand, within HP15_1476at 1552.256 kb on - strand, within HP15_1476at 1552.264 kb on - strand, within HP15_1476at 1552.517 kb on - strandat 1552.519 kb on + strandat 1552.581 kb on + strandat 1552.610 kb on + strandat 1552.730 kb on + strandat 1552.748 kb on + strandat 1552.835 kb on + strand, within HP15_1477at 1552.850 kb on + strand, within HP15_1477at 1552.850 kb on + strand, within HP15_1477at 1552.858 kb on - strand, within HP15_1477at 1553.111 kb on + strand, within HP15_1477at 1553.178 kb on + strand, within HP15_1477at 1553.186 kb on - strand, within HP15_1477at 1553.186 kb on - strand, within HP15_1477at 1553.309 kb on - strand, within HP15_1477at 1553.326 kb on - strand, within HP15_1477at 1553.326 kb on - strand, within HP15_1477at 1553.346 kb on - strand, within HP15_1477at 1553.346 kb on - strand, within HP15_1477at 1553.437 kb on + strand, within HP15_1477at 1553.445 kb on - strand, within HP15_1477at 1553.572 kb on - strand, within HP15_1477at 1553.574 kb on + strand, within HP15_1477at 1553.605 kb on - strand, within HP15_1477at 1553.684 kb on - strand, within HP15_1477at 1553.779 kb on + strandat 1553.787 kb on - strandat 1553.787 kb on - strandat 1553.941 kb on + strandat 1553.941 kb on + strandat 1554.223 kb on + strand, within HP15_1478at 1554.272 kb on + strand, within HP15_1478at 1554.458 kb on + strand, within HP15_1478at 1554.483 kb on - strand, within HP15_1478at 1554.498 kb on - strand, within HP15_1478at 1554.578 kb on - strand, within HP15_1478at 1554.768 kb on - strand, within HP15_1478

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM
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1,551,707 + HP15_1476 0.54 -1.5
1,551,707 + HP15_1476 0.54 -1.3
1,551,707 + HP15_1476 0.54 -0.0
1,551,717 + HP15_1476 0.55 -0.0
1,551,865 - HP15_1476 0.62 -2.1
1,552,138 + HP15_1476 0.75 -1.0
1,552,160 + HP15_1476 0.76 +0.4
1,552,241 + HP15_1476 0.80 -0.6
1,552,241 + HP15_1476 0.80 -2.9
1,552,241 + HP15_1476 0.80 -1.0
1,552,256 - HP15_1476 0.81 -1.3
1,552,264 - HP15_1476 0.81 -1.5
1,552,517 - -1.4
1,552,519 + -1.6
1,552,581 + -1.1
1,552,610 + -1.8
1,552,730 + -1.3
1,552,748 + -2.2
1,552,835 + HP15_1477 0.14 -0.9
1,552,850 + HP15_1477 0.16 -1.0
1,552,850 + HP15_1477 0.16 -1.2
1,552,858 - HP15_1477 0.16 -1.1
1,553,111 + HP15_1477 0.37 -1.2
1,553,178 + HP15_1477 0.42 -1.1
1,553,186 - HP15_1477 0.43 -2.0
1,553,186 - HP15_1477 0.43 -0.7
1,553,309 - HP15_1477 0.53 -0.5
1,553,326 - HP15_1477 0.54 -1.4
1,553,326 - HP15_1477 0.54 +0.1
1,553,346 - HP15_1477 0.56 -2.3
1,553,346 - HP15_1477 0.56 -1.3
1,553,437 + HP15_1477 0.64 -3.2
1,553,445 - HP15_1477 0.64 +1.7
1,553,572 - HP15_1477 0.75 -1.6
1,553,574 + HP15_1477 0.75 -1.3
1,553,605 - HP15_1477 0.77 -0.6
1,553,684 - HP15_1477 0.84 -1.2
1,553,779 + -1.4
1,553,787 - -0.4
1,553,787 - -0.6
1,553,941 + +0.3
1,553,941 + +0.4
1,554,223 + HP15_1478 0.12 +1.0
1,554,272 + HP15_1478 0.17 -2.0
1,554,458 + HP15_1478 0.34 -2.2
1,554,483 - HP15_1478 0.36 +0.2
1,554,498 - HP15_1478 0.37 +0.4
1,554,578 - HP15_1478 0.44 +0.2
1,554,768 - HP15_1478 0.62 +0.1

Or see this region's nucleotide sequence