Strain Fitness in Marinobacter adhaerens HP15 around HP15_1476

Experiment: m.b. Choline chloride 358.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1475 and HP15_1476 are separated by 5 nucleotidesHP15_1476 and HP15_1477 are separated by 18 nucleotides HP15_1475: HP15_1475 - flagellar rod assembly protein/muramidase FlgJ, at 1,549,618 to 1,550,604 _1475 HP15_1476: HP15_1476 - flagellar hook-associated protein FlgK, at 1,550,610 to 1,552,640 _1476 HP15_1477: HP15_1477 - flagellar hook-associated protein FlgL, at 1,552,659 to 1,553,882 _1477 Position (kb) 1550 1551 1552 1553Strain fitness (log2 ratio) -3 -2 -1 0 1at 1549.618 kb on + strandat 1549.631 kb on - strandat 1549.641 kb on + strandat 1549.647 kb on + strandat 1549.655 kb on - strandat 1549.655 kb on - strandat 1549.667 kb on + strandat 1549.675 kb on - strandat 1549.684 kb on + strandat 1549.692 kb on - strandat 1549.697 kb on - strandat 1549.699 kb on + strandat 1549.707 kb on - strandat 1549.707 kb on - strandat 1549.707 kb on - strandat 1549.707 kb on - strandat 1549.722 kb on - strand, within HP15_1475at 1549.866 kb on + strand, within HP15_1475at 1549.892 kb on + strand, within HP15_1475at 1549.987 kb on + strand, within HP15_1475at 1550.081 kb on + strand, within HP15_1475at 1550.135 kb on - strand, within HP15_1475at 1550.264 kb on + strand, within HP15_1475at 1550.272 kb on - strand, within HP15_1475at 1550.272 kb on - strand, within HP15_1475at 1550.272 kb on - strand, within HP15_1475at 1550.344 kb on + strand, within HP15_1475at 1550.354 kb on + strand, within HP15_1475at 1550.515 kb on + strandat 1550.599 kb on + strandat 1550.606 kb on + strandat 1550.606 kb on + strandat 1550.626 kb on + strandat 1550.634 kb on - strandat 1550.705 kb on + strandat 1550.911 kb on - strand, within HP15_1476at 1551.123 kb on + strand, within HP15_1476at 1551.172 kb on + strand, within HP15_1476at 1551.372 kb on + strand, within HP15_1476at 1551.372 kb on + strand, within HP15_1476at 1551.516 kb on - strand, within HP15_1476at 1551.526 kb on - strand, within HP15_1476at 1551.534 kb on - strand, within HP15_1476at 1551.555 kb on + strand, within HP15_1476at 1551.555 kb on + strand, within HP15_1476at 1551.612 kb on + strand, within HP15_1476at 1551.648 kb on + strand, within HP15_1476at 1551.707 kb on + strand, within HP15_1476at 1551.707 kb on + strand, within HP15_1476at 1551.707 kb on + strand, within HP15_1476at 1551.717 kb on + strand, within HP15_1476at 1551.865 kb on - strand, within HP15_1476at 1552.138 kb on + strand, within HP15_1476at 1552.160 kb on + strand, within HP15_1476at 1552.241 kb on + strand, within HP15_1476at 1552.241 kb on + strand, within HP15_1476at 1552.241 kb on + strand, within HP15_1476at 1552.256 kb on - strand, within HP15_1476at 1552.264 kb on - strand, within HP15_1476at 1552.517 kb on - strandat 1552.519 kb on + strandat 1552.581 kb on + strandat 1552.610 kb on + strandat 1552.730 kb on + strandat 1552.748 kb on + strandat 1552.835 kb on + strand, within HP15_1477at 1552.850 kb on + strand, within HP15_1477at 1552.850 kb on + strand, within HP15_1477at 1552.858 kb on - strand, within HP15_1477at 1553.111 kb on + strand, within HP15_1477at 1553.178 kb on + strand, within HP15_1477at 1553.186 kb on - strand, within HP15_1477at 1553.186 kb on - strand, within HP15_1477at 1553.309 kb on - strand, within HP15_1477at 1553.326 kb on - strand, within HP15_1477at 1553.326 kb on - strand, within HP15_1477at 1553.346 kb on - strand, within HP15_1477at 1553.346 kb on - strand, within HP15_1477at 1553.437 kb on + strand, within HP15_1477at 1553.445 kb on - strand, within HP15_1477at 1553.572 kb on - strand, within HP15_1477at 1553.574 kb on + strand, within HP15_1477at 1553.605 kb on - strand, within HP15_1477

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM
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1,549,618 + +0.8
1,549,631 - -0.2
1,549,641 + +1.2
1,549,647 + +0.2
1,549,655 - -1.3
1,549,655 - -1.1
1,549,667 + -1.2
1,549,675 - -1.2
1,549,684 + -1.5
1,549,692 - -0.4
1,549,697 - -1.6
1,549,699 + -1.3
1,549,707 - -1.6
1,549,707 - -3.0
1,549,707 - -1.6
1,549,707 - -2.7
1,549,722 - HP15_1475 0.11 -1.8
1,549,866 + HP15_1475 0.25 -2.2
1,549,892 + HP15_1475 0.28 -1.0
1,549,987 + HP15_1475 0.37 -1.8
1,550,081 + HP15_1475 0.47 -2.2
1,550,135 - HP15_1475 0.52 -1.9
1,550,264 + HP15_1475 0.65 -0.2
1,550,272 - HP15_1475 0.66 -1.1
1,550,272 - HP15_1475 0.66 -0.6
1,550,272 - HP15_1475 0.66 -2.9
1,550,344 + HP15_1475 0.74 -2.0
1,550,354 + HP15_1475 0.75 -0.4
1,550,515 + -2.6
1,550,599 + -1.5
1,550,606 + -0.9
1,550,606 + -1.2
1,550,626 + -0.7
1,550,634 - -0.9
1,550,705 + -1.3
1,550,911 - HP15_1476 0.15 -1.6
1,551,123 + HP15_1476 0.25 -1.3
1,551,172 + HP15_1476 0.28 -0.8
1,551,372 + HP15_1476 0.38 -2.4
1,551,372 + HP15_1476 0.38 -1.8
1,551,516 - HP15_1476 0.45 -1.8
1,551,526 - HP15_1476 0.45 -1.0
1,551,534 - HP15_1476 0.45 -0.9
1,551,555 + HP15_1476 0.47 -1.5
1,551,555 + HP15_1476 0.47 -1.2
1,551,612 + HP15_1476 0.49 -2.2
1,551,648 + HP15_1476 0.51 -0.8
1,551,707 + HP15_1476 0.54 -1.5
1,551,707 + HP15_1476 0.54 -1.3
1,551,707 + HP15_1476 0.54 -0.0
1,551,717 + HP15_1476 0.55 -0.0
1,551,865 - HP15_1476 0.62 -2.1
1,552,138 + HP15_1476 0.75 -1.0
1,552,160 + HP15_1476 0.76 +0.4
1,552,241 + HP15_1476 0.80 -0.6
1,552,241 + HP15_1476 0.80 -2.9
1,552,241 + HP15_1476 0.80 -1.0
1,552,256 - HP15_1476 0.81 -1.3
1,552,264 - HP15_1476 0.81 -1.5
1,552,517 - -1.4
1,552,519 + -1.6
1,552,581 + -1.1
1,552,610 + -1.8
1,552,730 + -1.3
1,552,748 + -2.2
1,552,835 + HP15_1477 0.14 -0.9
1,552,850 + HP15_1477 0.16 -1.0
1,552,850 + HP15_1477 0.16 -1.2
1,552,858 - HP15_1477 0.16 -1.1
1,553,111 + HP15_1477 0.37 -1.2
1,553,178 + HP15_1477 0.42 -1.1
1,553,186 - HP15_1477 0.43 -2.0
1,553,186 - HP15_1477 0.43 -0.7
1,553,309 - HP15_1477 0.53 -0.5
1,553,326 - HP15_1477 0.54 -1.4
1,553,326 - HP15_1477 0.54 +0.1
1,553,346 - HP15_1477 0.56 -2.3
1,553,346 - HP15_1477 0.56 -1.3
1,553,437 + HP15_1477 0.64 -3.2
1,553,445 - HP15_1477 0.64 +1.7
1,553,572 - HP15_1477 0.75 -1.6
1,553,574 + HP15_1477 0.75 -1.3
1,553,605 - HP15_1477 0.77 -0.6

Or see this region's nucleotide sequence