Experiment: m.b. Choline chloride 358.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1475 and HP15_1476 are separated by 5 nucleotides HP15_1476 and HP15_1477 are separated by 18 nucleotides
HP15_1475: HP15_1475 - flagellar rod assembly protein/muramidase FlgJ, at 1,549,618 to 1,550,604
_1475
HP15_1476: HP15_1476 - flagellar hook-associated protein FlgK, at 1,550,610 to 1,552,640
_1476
HP15_1477: HP15_1477 - flagellar hook-associated protein FlgL, at 1,552,659 to 1,553,882
_1477
Position (kb)
1550
1551
1552
1553 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1549.618 kb on + strand at 1549.631 kb on - strand at 1549.641 kb on + strand at 1549.647 kb on + strand at 1549.655 kb on - strand at 1549.655 kb on - strand at 1549.667 kb on + strand at 1549.675 kb on - strand at 1549.684 kb on + strand at 1549.692 kb on - strand at 1549.697 kb on - strand at 1549.699 kb on + strand at 1549.707 kb on - strand at 1549.707 kb on - strand at 1549.707 kb on - strand at 1549.707 kb on - strand at 1549.722 kb on - strand, within HP15_1475 at 1549.866 kb on + strand, within HP15_1475 at 1549.892 kb on + strand, within HP15_1475 at 1549.987 kb on + strand, within HP15_1475 at 1550.081 kb on + strand, within HP15_1475 at 1550.135 kb on - strand, within HP15_1475 at 1550.264 kb on + strand, within HP15_1475 at 1550.272 kb on - strand, within HP15_1475 at 1550.272 kb on - strand, within HP15_1475 at 1550.272 kb on - strand, within HP15_1475 at 1550.344 kb on + strand, within HP15_1475 at 1550.354 kb on + strand, within HP15_1475 at 1550.515 kb on + strand at 1550.599 kb on + strand at 1550.606 kb on + strand at 1550.606 kb on + strand at 1550.626 kb on + strand at 1550.634 kb on - strand at 1550.705 kb on + strand at 1550.911 kb on - strand, within HP15_1476 at 1551.123 kb on + strand, within HP15_1476 at 1551.172 kb on + strand, within HP15_1476 at 1551.372 kb on + strand, within HP15_1476 at 1551.372 kb on + strand, within HP15_1476 at 1551.516 kb on - strand, within HP15_1476 at 1551.526 kb on - strand, within HP15_1476 at 1551.534 kb on - strand, within HP15_1476 at 1551.555 kb on + strand, within HP15_1476 at 1551.555 kb on + strand, within HP15_1476 at 1551.612 kb on + strand, within HP15_1476 at 1551.648 kb on + strand, within HP15_1476 at 1551.707 kb on + strand, within HP15_1476 at 1551.707 kb on + strand, within HP15_1476 at 1551.707 kb on + strand, within HP15_1476 at 1551.717 kb on + strand, within HP15_1476 at 1551.865 kb on - strand, within HP15_1476 at 1552.138 kb on + strand, within HP15_1476 at 1552.160 kb on + strand, within HP15_1476 at 1552.241 kb on + strand, within HP15_1476 at 1552.241 kb on + strand, within HP15_1476 at 1552.241 kb on + strand, within HP15_1476 at 1552.256 kb on - strand, within HP15_1476 at 1552.264 kb on - strand, within HP15_1476 at 1552.517 kb on - strand at 1552.519 kb on + strand at 1552.581 kb on + strand at 1552.610 kb on + strand at 1552.730 kb on + strand at 1552.748 kb on + strand at 1552.835 kb on + strand, within HP15_1477 at 1552.850 kb on + strand, within HP15_1477 at 1552.850 kb on + strand, within HP15_1477 at 1552.858 kb on - strand, within HP15_1477 at 1553.111 kb on + strand, within HP15_1477 at 1553.178 kb on + strand, within HP15_1477 at 1553.186 kb on - strand, within HP15_1477 at 1553.186 kb on - strand, within HP15_1477 at 1553.309 kb on - strand, within HP15_1477 at 1553.326 kb on - strand, within HP15_1477 at 1553.326 kb on - strand, within HP15_1477 at 1553.346 kb on - strand, within HP15_1477 at 1553.346 kb on - strand, within HP15_1477 at 1553.437 kb on + strand, within HP15_1477 at 1553.445 kb on - strand, within HP15_1477 at 1553.572 kb on - strand, within HP15_1477 at 1553.574 kb on + strand, within HP15_1477 at 1553.605 kb on - strand, within HP15_1477
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM remove 1,549,618 + +0.8 1,549,631 - -0.2 1,549,641 + +1.2 1,549,647 + +0.2 1,549,655 - -1.3 1,549,655 - -1.1 1,549,667 + -1.2 1,549,675 - -1.2 1,549,684 + -1.5 1,549,692 - -0.4 1,549,697 - -1.6 1,549,699 + -1.3 1,549,707 - -1.6 1,549,707 - -3.0 1,549,707 - -1.6 1,549,707 - -2.7 1,549,722 - HP15_1475 0.11 -1.8 1,549,866 + HP15_1475 0.25 -2.2 1,549,892 + HP15_1475 0.28 -1.0 1,549,987 + HP15_1475 0.37 -1.8 1,550,081 + HP15_1475 0.47 -2.2 1,550,135 - HP15_1475 0.52 -1.9 1,550,264 + HP15_1475 0.65 -0.2 1,550,272 - HP15_1475 0.66 -1.1 1,550,272 - HP15_1475 0.66 -0.6 1,550,272 - HP15_1475 0.66 -2.9 1,550,344 + HP15_1475 0.74 -2.0 1,550,354 + HP15_1475 0.75 -0.4 1,550,515 + -2.6 1,550,599 + -1.5 1,550,606 + -0.9 1,550,606 + -1.2 1,550,626 + -0.7 1,550,634 - -0.9 1,550,705 + -1.3 1,550,911 - HP15_1476 0.15 -1.6 1,551,123 + HP15_1476 0.25 -1.3 1,551,172 + HP15_1476 0.28 -0.8 1,551,372 + HP15_1476 0.38 -2.4 1,551,372 + HP15_1476 0.38 -1.8 1,551,516 - HP15_1476 0.45 -1.8 1,551,526 - HP15_1476 0.45 -1.0 1,551,534 - HP15_1476 0.45 -0.9 1,551,555 + HP15_1476 0.47 -1.5 1,551,555 + HP15_1476 0.47 -1.2 1,551,612 + HP15_1476 0.49 -2.2 1,551,648 + HP15_1476 0.51 -0.8 1,551,707 + HP15_1476 0.54 -1.5 1,551,707 + HP15_1476 0.54 -1.3 1,551,707 + HP15_1476 0.54 -0.0 1,551,717 + HP15_1476 0.55 -0.0 1,551,865 - HP15_1476 0.62 -2.1 1,552,138 + HP15_1476 0.75 -1.0 1,552,160 + HP15_1476 0.76 +0.4 1,552,241 + HP15_1476 0.80 -0.6 1,552,241 + HP15_1476 0.80 -2.9 1,552,241 + HP15_1476 0.80 -1.0 1,552,256 - HP15_1476 0.81 -1.3 1,552,264 - HP15_1476 0.81 -1.5 1,552,517 - -1.4 1,552,519 + -1.6 1,552,581 + -1.1 1,552,610 + -1.8 1,552,730 + -1.3 1,552,748 + -2.2 1,552,835 + HP15_1477 0.14 -0.9 1,552,850 + HP15_1477 0.16 -1.0 1,552,850 + HP15_1477 0.16 -1.2 1,552,858 - HP15_1477 0.16 -1.1 1,553,111 + HP15_1477 0.37 -1.2 1,553,178 + HP15_1477 0.42 -1.1 1,553,186 - HP15_1477 0.43 -2.0 1,553,186 - HP15_1477 0.43 -0.7 1,553,309 - HP15_1477 0.53 -0.5 1,553,326 - HP15_1477 0.54 -1.4 1,553,326 - HP15_1477 0.54 +0.1 1,553,346 - HP15_1477 0.56 -2.3 1,553,346 - HP15_1477 0.56 -1.3 1,553,437 + HP15_1477 0.64 -3.2 1,553,445 - HP15_1477 0.64 +1.7 1,553,572 - HP15_1477 0.75 -1.6 1,553,574 + HP15_1477 0.75 -1.3 1,553,605 - HP15_1477 0.77 -0.6
Or see this region's nucleotide sequence