Strain Fitness in Marinobacter adhaerens HP15 around HP15_1472

Experiment: m.b. Choline chloride 358.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1470 and HP15_1471 are separated by 76 nucleotidesHP15_1471 and HP15_1472 are separated by 82 nucleotidesHP15_1472 and HP15_1473 are separated by 19 nucleotidesHP15_1473 and HP15_1474 overlap by 4 nucleotides HP15_1470: HP15_1470 - flagellar hook protein FlgE, at 1,544,196 to 1,546,094 _1470 HP15_1471: HP15_1471 - flagellar basal-body rod FlgF, at 1,546,171 to 1,546,923 _1471 HP15_1472: HP15_1472 - flagellar basal-body rod protein FlgG, at 1,547,006 to 1,547,794 _1472 HP15_1473: HP15_1473 - flagellar basal body L-ring protein, at 1,547,814 to 1,548,515 _1473 HP15_1474: HP15_1474 - flagellar P-ring protein precursor I, at 1,548,512 to 1,549,609 _1474 Position (kb) 1547 1548Strain fitness (log2 ratio) -2 -1 0 1at 1546.073 kb on - strandat 1546.084 kb on + strandat 1546.238 kb on - strandat 1546.290 kb on + strand, within HP15_1471at 1546.291 kb on + strand, within HP15_1471at 1546.332 kb on + strand, within HP15_1471at 1546.383 kb on + strand, within HP15_1471at 1546.391 kb on - strand, within HP15_1471at 1546.429 kb on - strand, within HP15_1471at 1546.572 kb on - strand, within HP15_1471at 1546.647 kb on + strand, within HP15_1471at 1546.660 kb on - strand, within HP15_1471at 1546.670 kb on - strand, within HP15_1471at 1546.693 kb on + strand, within HP15_1471at 1546.694 kb on + strand, within HP15_1471at 1546.701 kb on - strand, within HP15_1471at 1546.828 kb on - strand, within HP15_1471at 1546.836 kb on - strand, within HP15_1471at 1546.925 kb on - strandat 1546.928 kb on + strandat 1546.959 kb on - strandat 1547.010 kb on + strandat 1547.022 kb on + strandat 1547.089 kb on + strand, within HP15_1472at 1547.121 kb on - strand, within HP15_1472at 1547.121 kb on - strand, within HP15_1472at 1547.121 kb on - strand, within HP15_1472at 1547.121 kb on - strand, within HP15_1472at 1547.121 kb on - strand, within HP15_1472at 1547.216 kb on + strand, within HP15_1472at 1547.219 kb on - strand, within HP15_1472at 1547.396 kb on + strand, within HP15_1472at 1547.401 kb on + strand, within HP15_1472at 1547.560 kb on - strand, within HP15_1472at 1547.578 kb on + strand, within HP15_1472at 1547.596 kb on - strand, within HP15_1472at 1547.637 kb on - strand, within HP15_1472at 1547.651 kb on - strand, within HP15_1472at 1547.668 kb on + strand, within HP15_1472at 1547.673 kb on + strand, within HP15_1472at 1547.733 kb on + strandat 1547.785 kb on - strandat 1547.830 kb on + strandat 1547.831 kb on + strandat 1547.839 kb on - strandat 1547.922 kb on + strand, within HP15_1473at 1547.930 kb on - strand, within HP15_1473at 1547.940 kb on - strand, within HP15_1473at 1547.968 kb on - strand, within HP15_1473at 1548.064 kb on + strand, within HP15_1473at 1548.326 kb on + strand, within HP15_1473at 1548.347 kb on - strand, within HP15_1473at 1548.365 kb on - strand, within HP15_1473at 1548.375 kb on - strand, within HP15_1473at 1548.442 kb on - strand, within HP15_1473at 1548.547 kb on - strandat 1548.609 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM
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1,546,073 - -2.6
1,546,084 + -0.7
1,546,238 - -0.0
1,546,290 + HP15_1471 0.16 -1.1
1,546,291 + HP15_1471 0.16 -1.3
1,546,332 + HP15_1471 0.21 -1.4
1,546,383 + HP15_1471 0.28 -1.5
1,546,391 - HP15_1471 0.29 -1.4
1,546,429 - HP15_1471 0.34 -1.0
1,546,572 - HP15_1471 0.53 -1.4
1,546,647 + HP15_1471 0.63 -1.2
1,546,660 - HP15_1471 0.65 -1.7
1,546,670 - HP15_1471 0.66 -1.9
1,546,693 + HP15_1471 0.69 -1.1
1,546,694 + HP15_1471 0.69 -1.1
1,546,701 - HP15_1471 0.70 -1.5
1,546,828 - HP15_1471 0.87 -2.7
1,546,836 - HP15_1471 0.88 -1.3
1,546,925 - -1.2
1,546,928 + -0.3
1,546,959 - -1.2
1,547,010 + -1.5
1,547,022 + -1.5
1,547,089 + HP15_1472 0.11 -2.2
1,547,121 - HP15_1472 0.15 -0.8
1,547,121 - HP15_1472 0.15 -1.5
1,547,121 - HP15_1472 0.15 +1.0
1,547,121 - HP15_1472 0.15 -1.3
1,547,121 - HP15_1472 0.15 -1.2
1,547,216 + HP15_1472 0.27 -2.1
1,547,219 - HP15_1472 0.27 -1.6
1,547,396 + HP15_1472 0.49 -1.2
1,547,401 + HP15_1472 0.50 -0.6
1,547,560 - HP15_1472 0.70 -1.6
1,547,578 + HP15_1472 0.72 +0.1
1,547,596 - HP15_1472 0.75 -0.7
1,547,637 - HP15_1472 0.80 -1.8
1,547,651 - HP15_1472 0.82 -1.9
1,547,668 + HP15_1472 0.84 -1.2
1,547,673 + HP15_1472 0.85 -0.9
1,547,733 + -1.8
1,547,785 - -0.9
1,547,830 + -2.6
1,547,831 + -1.2
1,547,839 - -1.6
1,547,922 + HP15_1473 0.15 -1.6
1,547,930 - HP15_1473 0.17 -1.9
1,547,940 - HP15_1473 0.18 -1.7
1,547,968 - HP15_1473 0.22 -1.6
1,548,064 + HP15_1473 0.36 -0.4
1,548,326 + HP15_1473 0.73 -0.1
1,548,347 - HP15_1473 0.76 -1.5
1,548,365 - HP15_1473 0.78 -1.5
1,548,375 - HP15_1473 0.80 -2.0
1,548,442 - HP15_1473 0.89 -0.7
1,548,547 - -1.6
1,548,609 - -1.8

Or see this region's nucleotide sequence