Experiment: m.b. Choline chloride 358.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1410 and HP15_1411 are separated by 88 nucleotides HP15_1411 and HP15_1412 are separated by 13 nucleotides
HP15_1410: HP15_1410 - iron(III) compound receptor, at 1,489,076 to 1,491,175
_1410
HP15_1411: HP15_1411 - hypothetical 3-methyladenine DNA glycosylase, at 1,491,264 to 1,491,929
_1411
HP15_1412: HP15_1412 - conserved hypothetical protein, membrane, at 1,491,943 to 1,493,067
_1412
Position (kb)
1491
1492 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1490.269 kb on + strand, within HP15_1410 at 1490.269 kb on + strand, within HP15_1410 at 1490.274 kb on + strand, within HP15_1410 at 1490.277 kb on - strand, within HP15_1410 at 1490.356 kb on + strand, within HP15_1410 at 1490.372 kb on - strand, within HP15_1410 at 1490.393 kb on + strand, within HP15_1410 at 1490.403 kb on - strand, within HP15_1410 at 1490.501 kb on + strand, within HP15_1410 at 1490.602 kb on + strand, within HP15_1410 at 1490.618 kb on - strand, within HP15_1410 at 1490.622 kb on + strand, within HP15_1410 at 1490.622 kb on + strand, within HP15_1410 at 1490.681 kb on + strand, within HP15_1410 at 1490.719 kb on - strand, within HP15_1410 at 1490.766 kb on + strand, within HP15_1410 at 1490.878 kb on + strand, within HP15_1410 at 1490.878 kb on + strand, within HP15_1410 at 1490.880 kb on - strand, within HP15_1410 at 1490.886 kb on + strand, within HP15_1410 at 1490.886 kb on + strand, within HP15_1410 at 1490.886 kb on - strand, within HP15_1410 at 1490.894 kb on - strand, within HP15_1410 at 1490.894 kb on - strand, within HP15_1410 at 1490.958 kb on + strand, within HP15_1410 at 1490.963 kb on + strand, within HP15_1410 at 1491.136 kb on + strand at 1491.144 kb on - strand at 1491.149 kb on + strand at 1491.397 kb on + strand, within HP15_1411 at 1491.400 kb on - strand, within HP15_1411 at 1491.400 kb on - strand, within HP15_1411 at 1491.405 kb on - strand, within HP15_1411 at 1491.431 kb on + strand, within HP15_1411 at 1491.431 kb on + strand, within HP15_1411 at 1491.508 kb on + strand, within HP15_1411 at 1491.530 kb on + strand, within HP15_1411 at 1491.535 kb on + strand, within HP15_1411 at 1491.715 kb on - strand, within HP15_1411 at 1491.777 kb on - strand, within HP15_1411 at 1491.932 kb on - strand at 1492.157 kb on + strand, within HP15_1412 at 1492.165 kb on - strand, within HP15_1412 at 1492.184 kb on - strand, within HP15_1412 at 1492.249 kb on + strand, within HP15_1412 at 1492.268 kb on + strand, within HP15_1412 at 1492.274 kb on - strand, within HP15_1412 at 1492.325 kb on + strand, within HP15_1412 at 1492.671 kb on - strand, within HP15_1412 at 1492.707 kb on + strand, within HP15_1412 at 1492.721 kb on + strand, within HP15_1412 at 1492.763 kb on + strand, within HP15_1412 at 1492.894 kb on - strand, within HP15_1412
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM remove 1,490,269 + HP15_1410 0.57 -0.5 1,490,269 + HP15_1410 0.57 +0.2 1,490,274 + HP15_1410 0.57 -1.9 1,490,277 - HP15_1410 0.57 +0.2 1,490,356 + HP15_1410 0.61 -0.2 1,490,372 - HP15_1410 0.62 +0.5 1,490,393 + HP15_1410 0.63 -0.9 1,490,403 - HP15_1410 0.63 -0.6 1,490,501 + HP15_1410 0.68 +0.5 1,490,602 + HP15_1410 0.73 +0.4 1,490,618 - HP15_1410 0.73 +0.1 1,490,622 + HP15_1410 0.74 +0.2 1,490,622 + HP15_1410 0.74 +0.3 1,490,681 + HP15_1410 0.76 +0.2 1,490,719 - HP15_1410 0.78 -0.7 1,490,766 + HP15_1410 0.80 -4.1 1,490,878 + HP15_1410 0.86 -0.2 1,490,878 + HP15_1410 0.86 +0.3 1,490,880 - HP15_1410 0.86 -1.5 1,490,886 + HP15_1410 0.86 +0.2 1,490,886 + HP15_1410 0.86 -0.6 1,490,886 - HP15_1410 0.86 -2.0 1,490,894 - HP15_1410 0.87 +0.6 1,490,894 - HP15_1410 0.87 +0.4 1,490,958 + HP15_1410 0.90 +1.0 1,490,963 + HP15_1410 0.90 -1.4 1,491,136 + +0.1 1,491,144 - -2.7 1,491,149 + +0.2 1,491,397 + HP15_1411 0.20 +1.3 1,491,400 - HP15_1411 0.20 +0.2 1,491,400 - HP15_1411 0.20 +0.8 1,491,405 - HP15_1411 0.21 -1.8 1,491,431 + HP15_1411 0.25 +0.3 1,491,431 + HP15_1411 0.25 +0.3 1,491,508 + HP15_1411 0.37 +0.1 1,491,530 + HP15_1411 0.40 -0.0 1,491,535 + HP15_1411 0.41 -0.8 1,491,715 - HP15_1411 0.68 +0.5 1,491,777 - HP15_1411 0.77 +0.5 1,491,932 - +0.6 1,492,157 + HP15_1412 0.19 +0.4 1,492,165 - HP15_1412 0.20 -0.8 1,492,184 - HP15_1412 0.21 -0.0 1,492,249 + HP15_1412 0.27 -1.9 1,492,268 + HP15_1412 0.29 +0.5 1,492,274 - HP15_1412 0.29 +0.5 1,492,325 + HP15_1412 0.34 -0.0 1,492,671 - HP15_1412 0.65 -0.2 1,492,707 + HP15_1412 0.68 -0.2 1,492,721 + HP15_1412 0.69 -1.4 1,492,763 + HP15_1412 0.73 +0.2 1,492,894 - HP15_1412 0.85 +1.2
Or see this region's nucleotide sequence