Strain Fitness in Marinobacter adhaerens HP15 around HP15_1411

Experiment: m.b. Choline chloride 358.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1410 and HP15_1411 are separated by 88 nucleotidesHP15_1411 and HP15_1412 are separated by 13 nucleotides HP15_1410: HP15_1410 - iron(III) compound receptor, at 1,489,076 to 1,491,175 _1410 HP15_1411: HP15_1411 - hypothetical 3-methyladenine DNA glycosylase, at 1,491,264 to 1,491,929 _1411 HP15_1412: HP15_1412 - conserved hypothetical protein, membrane, at 1,491,943 to 1,493,067 _1412 Position (kb) 1491 1492Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1490.269 kb on + strand, within HP15_1410at 1490.269 kb on + strand, within HP15_1410at 1490.274 kb on + strand, within HP15_1410at 1490.277 kb on - strand, within HP15_1410at 1490.356 kb on + strand, within HP15_1410at 1490.372 kb on - strand, within HP15_1410at 1490.393 kb on + strand, within HP15_1410at 1490.403 kb on - strand, within HP15_1410at 1490.501 kb on + strand, within HP15_1410at 1490.602 kb on + strand, within HP15_1410at 1490.618 kb on - strand, within HP15_1410at 1490.622 kb on + strand, within HP15_1410at 1490.622 kb on + strand, within HP15_1410at 1490.681 kb on + strand, within HP15_1410at 1490.719 kb on - strand, within HP15_1410at 1490.766 kb on + strand, within HP15_1410at 1490.878 kb on + strand, within HP15_1410at 1490.878 kb on + strand, within HP15_1410at 1490.880 kb on - strand, within HP15_1410at 1490.886 kb on + strand, within HP15_1410at 1490.886 kb on + strand, within HP15_1410at 1490.886 kb on - strand, within HP15_1410at 1490.894 kb on - strand, within HP15_1410at 1490.894 kb on - strand, within HP15_1410at 1490.958 kb on + strand, within HP15_1410at 1490.963 kb on + strand, within HP15_1410at 1491.136 kb on + strandat 1491.144 kb on - strandat 1491.149 kb on + strandat 1491.397 kb on + strand, within HP15_1411at 1491.400 kb on - strand, within HP15_1411at 1491.400 kb on - strand, within HP15_1411at 1491.405 kb on - strand, within HP15_1411at 1491.431 kb on + strand, within HP15_1411at 1491.431 kb on + strand, within HP15_1411at 1491.508 kb on + strand, within HP15_1411at 1491.530 kb on + strand, within HP15_1411at 1491.535 kb on + strand, within HP15_1411at 1491.715 kb on - strand, within HP15_1411at 1491.777 kb on - strand, within HP15_1411at 1491.932 kb on - strandat 1492.157 kb on + strand, within HP15_1412at 1492.165 kb on - strand, within HP15_1412at 1492.184 kb on - strand, within HP15_1412at 1492.249 kb on + strand, within HP15_1412at 1492.268 kb on + strand, within HP15_1412at 1492.274 kb on - strand, within HP15_1412at 1492.325 kb on + strand, within HP15_1412at 1492.671 kb on - strand, within HP15_1412at 1492.707 kb on + strand, within HP15_1412at 1492.721 kb on + strand, within HP15_1412at 1492.763 kb on + strand, within HP15_1412at 1492.894 kb on - strand, within HP15_1412

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM
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1,490,269 + HP15_1410 0.57 -0.5
1,490,269 + HP15_1410 0.57 +0.2
1,490,274 + HP15_1410 0.57 -1.9
1,490,277 - HP15_1410 0.57 +0.2
1,490,356 + HP15_1410 0.61 -0.2
1,490,372 - HP15_1410 0.62 +0.5
1,490,393 + HP15_1410 0.63 -0.9
1,490,403 - HP15_1410 0.63 -0.6
1,490,501 + HP15_1410 0.68 +0.5
1,490,602 + HP15_1410 0.73 +0.4
1,490,618 - HP15_1410 0.73 +0.1
1,490,622 + HP15_1410 0.74 +0.2
1,490,622 + HP15_1410 0.74 +0.3
1,490,681 + HP15_1410 0.76 +0.2
1,490,719 - HP15_1410 0.78 -0.7
1,490,766 + HP15_1410 0.80 -4.1
1,490,878 + HP15_1410 0.86 -0.2
1,490,878 + HP15_1410 0.86 +0.3
1,490,880 - HP15_1410 0.86 -1.5
1,490,886 + HP15_1410 0.86 +0.2
1,490,886 + HP15_1410 0.86 -0.6
1,490,886 - HP15_1410 0.86 -2.0
1,490,894 - HP15_1410 0.87 +0.6
1,490,894 - HP15_1410 0.87 +0.4
1,490,958 + HP15_1410 0.90 +1.0
1,490,963 + HP15_1410 0.90 -1.4
1,491,136 + +0.1
1,491,144 - -2.7
1,491,149 + +0.2
1,491,397 + HP15_1411 0.20 +1.3
1,491,400 - HP15_1411 0.20 +0.2
1,491,400 - HP15_1411 0.20 +0.8
1,491,405 - HP15_1411 0.21 -1.8
1,491,431 + HP15_1411 0.25 +0.3
1,491,431 + HP15_1411 0.25 +0.3
1,491,508 + HP15_1411 0.37 +0.1
1,491,530 + HP15_1411 0.40 -0.0
1,491,535 + HP15_1411 0.41 -0.8
1,491,715 - HP15_1411 0.68 +0.5
1,491,777 - HP15_1411 0.77 +0.5
1,491,932 - +0.6
1,492,157 + HP15_1412 0.19 +0.4
1,492,165 - HP15_1412 0.20 -0.8
1,492,184 - HP15_1412 0.21 -0.0
1,492,249 + HP15_1412 0.27 -1.9
1,492,268 + HP15_1412 0.29 +0.5
1,492,274 - HP15_1412 0.29 +0.5
1,492,325 + HP15_1412 0.34 -0.0
1,492,671 - HP15_1412 0.65 -0.2
1,492,707 + HP15_1412 0.68 -0.2
1,492,721 + HP15_1412 0.69 -1.4
1,492,763 + HP15_1412 0.73 +0.2
1,492,894 - HP15_1412 0.85 +1.2

Or see this region's nucleotide sequence