Experiment: m.b. Choline chloride 358.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1276 and HP15_1277 are separated by 26 nucleotides HP15_1277 and HP15_1278 overlap by 4 nucleotides HP15_1278 and HP15_1279 are separated by 11 nucleotides HP15_1279 and HP15_1280 overlap by 4 nucleotides
HP15_1276: HP15_1276 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 1,337,630 to 1,338,331
_1276
HP15_1277: HP15_1277 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 1,338,358 to 1,338,837
_1277
HP15_1278: HP15_1278 - pseudouridylate synthase, at 1,338,834 to 1,339,883
_1278
HP15_1279: HP15_1279 - stationary-phase survival protein SurE, at 1,339,895 to 1,340,665
_1279
HP15_1280: HP15_1280 - protein-L-isoaspartate (D-aspartate) O-methyltransferase, at 1,340,662 to 1,341,318
_1280
Position (kb) 1338
1339
1340 Strain fitness (log2 ratio) -1
0
1
2 at 1338.333 kb on - strand at 1338.882 kb on - strand at 1338.901 kb on - strand at 1338.932 kb on + strand at 1338.955 kb on - strand, within HP15_1278 at 1339.262 kb on - strand, within HP15_1278 at 1339.267 kb on + strand, within HP15_1278 at 1339.293 kb on - strand, within HP15_1278 at 1339.295 kb on + strand, within HP15_1278 at 1339.359 kb on - strand, within HP15_1278 at 1339.394 kb on - strand, within HP15_1278 at 1339.394 kb on - strand, within HP15_1278 at 1339.419 kb on + strand, within HP15_1278 at 1339.432 kb on - strand, within HP15_1278 at 1340.614 kb on + strand at 1340.658 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM remove 1,338,333 - -0.3 1,338,882 - +0.5 1,338,901 - +0.0 1,338,932 + -1.4 1,338,955 - HP15_1278 0.12 -0.6 1,339,262 - HP15_1278 0.41 -0.9 1,339,267 + HP15_1278 0.41 -0.9 1,339,293 - HP15_1278 0.44 -0.2 1,339,295 + HP15_1278 0.44 +0.6 1,339,359 - HP15_1278 0.50 -0.3 1,339,394 - HP15_1278 0.53 -0.1 1,339,394 - HP15_1278 0.53 +0.1 1,339,419 + HP15_1278 0.56 +0.6 1,339,432 - HP15_1278 0.57 +0.2 1,340,614 + +0.8 1,340,658 + +2.4
Or see this region's nucleotide sequence