Strain Fitness in Marinobacter adhaerens HP15 around HP15_1204

Experiment: m.b. Choline chloride 358.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1203 and HP15_1204 are separated by 252 nucleotidesHP15_1204 and HP15_1205 are separated by 23 nucleotides HP15_1203: HP15_1203 - methyltransferase, at 1,243,978 to 1,245,054 _1203 HP15_1204: HP15_1204 - conserved hypothetical protein, at 1,245,307 to 1,246,170 _1204 HP15_1205: HP15_1205 - FOG: ankyrin repeat protein, at 1,246,194 to 1,248,944 _1205 Position (kb) 1245 1246 1247Strain fitness (log2 ratio) -2 -1 0 1 2at 1244.357 kb on - strand, within HP15_1203at 1244.425 kb on - strand, within HP15_1203at 1244.446 kb on + strand, within HP15_1203at 1244.554 kb on + strand, within HP15_1203at 1244.944 kb on - strand, within HP15_1203at 1244.944 kb on - strand, within HP15_1203at 1244.986 kb on + strandat 1245.013 kb on + strandat 1245.083 kb on - strandat 1245.143 kb on + strandat 1245.205 kb on + strandat 1245.213 kb on - strandat 1245.259 kb on - strandat 1245.340 kb on + strandat 1245.529 kb on - strand, within HP15_1204at 1245.576 kb on + strand, within HP15_1204at 1245.604 kb on - strand, within HP15_1204at 1245.645 kb on + strand, within HP15_1204at 1245.874 kb on + strand, within HP15_1204at 1245.884 kb on + strand, within HP15_1204at 1245.892 kb on - strand, within HP15_1204at 1245.892 kb on - strand, within HP15_1204at 1245.939 kb on + strand, within HP15_1204at 1245.961 kb on - strand, within HP15_1204at 1246.048 kb on - strand, within HP15_1204at 1246.183 kb on + strandat 1246.418 kb on + strandat 1246.512 kb on - strand, within HP15_1205at 1246.562 kb on + strand, within HP15_1205at 1246.668 kb on + strand, within HP15_1205at 1246.785 kb on - strand, within HP15_1205at 1246.827 kb on + strand, within HP15_1205at 1246.909 kb on + strand, within HP15_1205at 1246.924 kb on + strand, within HP15_1205at 1246.945 kb on + strand, within HP15_1205at 1246.980 kb on + strand, within HP15_1205at 1246.988 kb on - strand, within HP15_1205

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM
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1,244,357 - HP15_1203 0.35 -0.4
1,244,425 - HP15_1203 0.42 +0.3
1,244,446 + HP15_1203 0.43 +0.7
1,244,554 + HP15_1203 0.53 +0.0
1,244,944 - HP15_1203 0.90 +0.3
1,244,944 - HP15_1203 0.90 -0.2
1,244,986 + -1.4
1,245,013 + +2.3
1,245,083 - -1.4
1,245,143 + +0.0
1,245,205 + -1.8
1,245,213 - +0.3
1,245,259 - -1.2
1,245,340 + +1.7
1,245,529 - HP15_1204 0.26 +0.4
1,245,576 + HP15_1204 0.31 +0.9
1,245,604 - HP15_1204 0.34 +0.4
1,245,645 + HP15_1204 0.39 +0.6
1,245,874 + HP15_1204 0.66 -0.1
1,245,884 + HP15_1204 0.67 +1.0
1,245,892 - HP15_1204 0.68 +0.7
1,245,892 - HP15_1204 0.68 -0.7
1,245,939 + HP15_1204 0.73 +0.0
1,245,961 - HP15_1204 0.76 +0.5
1,246,048 - HP15_1204 0.86 +1.2
1,246,183 + -2.6
1,246,418 + -0.8
1,246,512 - HP15_1205 0.12 -0.6
1,246,562 + HP15_1205 0.13 -1.0
1,246,668 + HP15_1205 0.17 +0.2
1,246,785 - HP15_1205 0.21 -0.2
1,246,827 + HP15_1205 0.23 -2.2
1,246,909 + HP15_1205 0.26 -1.4
1,246,924 + HP15_1205 0.27 -1.2
1,246,945 + HP15_1205 0.27 +0.6
1,246,980 + HP15_1205 0.29 +1.9
1,246,988 - HP15_1205 0.29 +0.5

Or see this region's nucleotide sequence