Strain Fitness in Marinobacter adhaerens HP15 around HP15_1051

Experiment: m.b. Choline chloride 358.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1048 and HP15_1049 overlap by 4 nucleotidesHP15_1049 and HP15_1050 are separated by 240 nucleotidesHP15_1050 and HP15_1051 are separated by 15 nucleotidesHP15_1051 and HP15_1052 are separated by 217 nucleotides HP15_1048: HP15_1048 - recombinase A, at 1,069,781 to 1,070,827 _1048 HP15_1049: HP15_1049 - hypothetical protein, at 1,070,824 to 1,071,084 _1049 HP15_1050: HP15_1050 - conserved hypothetical protein, at 1,071,325 to 1,071,795 _1050 HP15_1051: HP15_1051 - conserved hypothetical protein, at 1,071,811 to 1,072,188 _1051 HP15_1052: HP15_1052 - peptidase S16, lon domain-containing protein, at 1,072,406 to 1,074,813 _1052 Position (kb) 1071 1072 1073Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1070.821 kb on + strandat 1070.829 kb on - strandat 1070.872 kb on - strand, within HP15_1049at 1071.025 kb on + strand, within HP15_1049at 1071.036 kb on - strand, within HP15_1049at 1071.039 kb on + strand, within HP15_1049at 1071.200 kb on + strandat 1071.203 kb on - strandat 1071.216 kb on - strandat 1071.241 kb on - strandat 1071.245 kb on + strandat 1071.253 kb on - strandat 1071.299 kb on - strandat 1071.356 kb on + strandat 1071.364 kb on - strandat 1071.413 kb on + strand, within HP15_1050at 1071.431 kb on - strand, within HP15_1050at 1071.439 kb on - strand, within HP15_1050at 1071.478 kb on + strand, within HP15_1050at 1071.478 kb on + strand, within HP15_1050at 1071.486 kb on - strand, within HP15_1050at 1071.571 kb on - strand, within HP15_1050at 1071.631 kb on - strand, within HP15_1050at 1071.764 kb on - strandat 1071.803 kb on + strandat 1071.852 kb on + strand, within HP15_1051at 1071.864 kb on - strand, within HP15_1051at 1071.935 kb on + strand, within HP15_1051at 1071.964 kb on - strand, within HP15_1051at 1071.984 kb on - strand, within HP15_1051at 1072.070 kb on - strand, within HP15_1051at 1072.227 kb on + strandat 1072.240 kb on + strandat 1072.350 kb on - strandat 1072.381 kb on + strandat 1072.429 kb on + strandat 1072.743 kb on - strand, within HP15_1052at 1072.743 kb on - strand, within HP15_1052at 1072.919 kb on + strand, within HP15_1052at 1072.959 kb on + strand, within HP15_1052at 1073.109 kb on + strand, within HP15_1052at 1073.112 kb on - strand, within HP15_1052at 1073.174 kb on - strand, within HP15_1052

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM
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1,070,821 + +1.3
1,070,829 - -1.6
1,070,872 - HP15_1049 0.18 +0.4
1,071,025 + HP15_1049 0.77 -0.6
1,071,036 - HP15_1049 0.81 +0.3
1,071,039 + HP15_1049 0.82 -1.4
1,071,200 + +0.2
1,071,203 - +0.4
1,071,216 - +0.3
1,071,241 - +1.3
1,071,245 + +0.1
1,071,253 - +0.5
1,071,299 - +0.5
1,071,356 + -0.6
1,071,364 - -1.6
1,071,413 + HP15_1050 0.19 +0.4
1,071,431 - HP15_1050 0.23 +0.3
1,071,439 - HP15_1050 0.24 -0.2
1,071,478 + HP15_1050 0.32 -2.8
1,071,478 + HP15_1050 0.32 +0.5
1,071,486 - HP15_1050 0.34 -1.4
1,071,571 - HP15_1050 0.52 -0.1
1,071,631 - HP15_1050 0.65 -0.1
1,071,764 - +2.1
1,071,803 + -0.1
1,071,852 + HP15_1051 0.11 -0.9
1,071,864 - HP15_1051 0.14 +0.3
1,071,935 + HP15_1051 0.33 +1.2
1,071,964 - HP15_1051 0.40 +0.2
1,071,984 - HP15_1051 0.46 +0.3
1,072,070 - HP15_1051 0.69 +1.2
1,072,227 + +0.4
1,072,240 + -2.9
1,072,350 - +0.1
1,072,381 + -0.3
1,072,429 + -1.3
1,072,743 - HP15_1052 0.14 -0.5
1,072,743 - HP15_1052 0.14 -1.1
1,072,919 + HP15_1052 0.21 -0.6
1,072,959 + HP15_1052 0.23 -0.2
1,073,109 + HP15_1052 0.29 -1.6
1,073,112 - HP15_1052 0.29 -0.9
1,073,174 - HP15_1052 0.32 -0.2

Or see this region's nucleotide sequence