Experiment: m.b. Choline chloride 358.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1048 and HP15_1049 overlap by 4 nucleotides HP15_1049 and HP15_1050 are separated by 240 nucleotides HP15_1050 and HP15_1051 are separated by 15 nucleotides HP15_1051 and HP15_1052 are separated by 217 nucleotides
HP15_1048: HP15_1048 - recombinase A, at 1,069,781 to 1,070,827
_1048
HP15_1049: HP15_1049 - hypothetical protein, at 1,070,824 to 1,071,084
_1049
HP15_1050: HP15_1050 - conserved hypothetical protein, at 1,071,325 to 1,071,795
_1050
HP15_1051: HP15_1051 - conserved hypothetical protein, at 1,071,811 to 1,072,188
_1051
HP15_1052: HP15_1052 - peptidase S16, lon domain-containing protein, at 1,072,406 to 1,074,813
_1052
Position (kb)
1071
1072
1073 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1070.821 kb on + strand at 1070.829 kb on - strand at 1070.872 kb on - strand, within HP15_1049 at 1071.025 kb on + strand, within HP15_1049 at 1071.036 kb on - strand, within HP15_1049 at 1071.039 kb on + strand, within HP15_1049 at 1071.200 kb on + strand at 1071.203 kb on - strand at 1071.216 kb on - strand at 1071.241 kb on - strand at 1071.245 kb on + strand at 1071.253 kb on - strand at 1071.299 kb on - strand at 1071.356 kb on + strand at 1071.364 kb on - strand at 1071.413 kb on + strand, within HP15_1050 at 1071.431 kb on - strand, within HP15_1050 at 1071.439 kb on - strand, within HP15_1050 at 1071.478 kb on + strand, within HP15_1050 at 1071.478 kb on + strand, within HP15_1050 at 1071.486 kb on - strand, within HP15_1050 at 1071.571 kb on - strand, within HP15_1050 at 1071.631 kb on - strand, within HP15_1050 at 1071.764 kb on - strand at 1071.803 kb on + strand at 1071.852 kb on + strand, within HP15_1051 at 1071.864 kb on - strand, within HP15_1051 at 1071.935 kb on + strand, within HP15_1051 at 1071.964 kb on - strand, within HP15_1051 at 1071.984 kb on - strand, within HP15_1051 at 1072.070 kb on - strand, within HP15_1051 at 1072.227 kb on + strand at 1072.240 kb on + strand at 1072.350 kb on - strand at 1072.381 kb on + strand at 1072.429 kb on + strand at 1072.743 kb on - strand, within HP15_1052 at 1072.743 kb on - strand, within HP15_1052 at 1072.919 kb on + strand, within HP15_1052 at 1072.959 kb on + strand, within HP15_1052 at 1073.109 kb on + strand, within HP15_1052 at 1073.112 kb on - strand, within HP15_1052 at 1073.174 kb on - strand, within HP15_1052
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Choline chloride 358.1 mM remove 1,070,821 + +1.3 1,070,829 - -1.6 1,070,872 - HP15_1049 0.18 +0.4 1,071,025 + HP15_1049 0.77 -0.6 1,071,036 - HP15_1049 0.81 +0.3 1,071,039 + HP15_1049 0.82 -1.4 1,071,200 + +0.2 1,071,203 - +0.4 1,071,216 - +0.3 1,071,241 - +1.3 1,071,245 + +0.1 1,071,253 - +0.5 1,071,299 - +0.5 1,071,356 + -0.6 1,071,364 - -1.6 1,071,413 + HP15_1050 0.19 +0.4 1,071,431 - HP15_1050 0.23 +0.3 1,071,439 - HP15_1050 0.24 -0.2 1,071,478 + HP15_1050 0.32 -2.8 1,071,478 + HP15_1050 0.32 +0.5 1,071,486 - HP15_1050 0.34 -1.4 1,071,571 - HP15_1050 0.52 -0.1 1,071,631 - HP15_1050 0.65 -0.1 1,071,764 - +2.1 1,071,803 + -0.1 1,071,852 + HP15_1051 0.11 -0.9 1,071,864 - HP15_1051 0.14 +0.3 1,071,935 + HP15_1051 0.33 +1.2 1,071,964 - HP15_1051 0.40 +0.2 1,071,984 - HP15_1051 0.46 +0.3 1,072,070 - HP15_1051 0.69 +1.2 1,072,227 + +0.4 1,072,240 + -2.9 1,072,350 - +0.1 1,072,381 + -0.3 1,072,429 + -1.3 1,072,743 - HP15_1052 0.14 -0.5 1,072,743 - HP15_1052 0.14 -1.1 1,072,919 + HP15_1052 0.21 -0.6 1,072,959 + HP15_1052 0.23 -0.2 1,073,109 + HP15_1052 0.29 -1.6 1,073,112 - HP15_1052 0.29 -0.9 1,073,174 - HP15_1052 0.32 -0.2
Or see this region's nucleotide sequence