Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2931

Experiment: MoLS4 minimal media with D,L-Cysteine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2930 and DvMF_2931 are separated by 330 nucleotidesDvMF_2931 and DvMF_2932 are separated by 724 nucleotides DvMF_2930: DvMF_2930 - transcriptional regulator, GntR family (RefSeq), at 3,701,469 to 3,702,350 _2930 DvMF_2931: DvMF_2931 - elongation factor G (RefSeq), at 3,702,681 to 3,704,747 _2931 DvMF_2932: DvMF_2932 - hypothetical protein (RefSeq), at 3,705,472 to 3,705,984 _2932 Position (kb) 3702 3703 3704 3705Strain fitness (log2 ratio) -2 -1 0 1at 3702.089 kb on + strand, within DvMF_2930at 3702.161 kb on - strand, within DvMF_2930at 3702.263 kb on - strandat 3702.661 kb on - strandat 3702.824 kb on - strandat 3702.987 kb on + strand, within DvMF_2931at 3703.293 kb on + strand, within DvMF_2931at 3703.425 kb on - strand, within DvMF_2931at 3703.506 kb on - strand, within DvMF_2931at 3703.506 kb on - strand, within DvMF_2931at 3703.707 kb on + strand, within DvMF_2931at 3703.918 kb on + strand, within DvMF_2931at 3703.960 kb on - strand, within DvMF_2931at 3704.179 kb on + strand, within DvMF_2931at 3704.311 kb on - strand, within DvMF_2931at 3704.379 kb on + strand, within DvMF_2931at 3704.542 kb on - strandat 3704.564 kb on + strandat 3704.611 kb on + strandat 3704.809 kb on + strandat 3704.965 kb on + strandat 3704.965 kb on + strandat 3704.965 kb on + strandat 3704.973 kb on - strandat 3705.167 kb on - strandat 3705.178 kb on - strandat 3705.326 kb on - strandat 3705.365 kb on - strandat 3705.375 kb on + strandat 3705.393 kb on + strandat 3705.463 kb on + strandat 3705.531 kb on - strand, within DvMF_2932at 3705.533 kb on + strand, within DvMF_2932at 3705.657 kb on + strand, within DvMF_2932at 3705.716 kb on + strand, within DvMF_2932

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media with D,L-Cysteine
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3,702,089 + DvMF_2930 0.70 -0.6
3,702,161 - DvMF_2930 0.78 -0.7
3,702,263 - -0.5
3,702,661 - +0.0
3,702,824 - -1.1
3,702,987 + DvMF_2931 0.15 -1.9
3,703,293 + DvMF_2931 0.30 -0.5
3,703,425 - DvMF_2931 0.36 -0.9
3,703,506 - DvMF_2931 0.40 -1.2
3,703,506 - DvMF_2931 0.40 -1.6
3,703,707 + DvMF_2931 0.50 -1.7
3,703,918 + DvMF_2931 0.60 -1.0
3,703,960 - DvMF_2931 0.62 -1.2
3,704,179 + DvMF_2931 0.72 -1.4
3,704,311 - DvMF_2931 0.79 -0.5
3,704,379 + DvMF_2931 0.82 -1.1
3,704,542 - -2.2
3,704,564 + -2.4
3,704,611 + -2.0
3,704,809 + -0.6
3,704,965 + -0.8
3,704,965 + -0.3
3,704,965 + -0.5
3,704,973 - -0.8
3,705,167 - +0.1
3,705,178 - -0.4
3,705,326 - -0.1
3,705,365 - -0.5
3,705,375 + -1.0
3,705,393 + -0.3
3,705,463 + -0.5
3,705,531 - DvMF_2932 0.12 -0.2
3,705,533 + DvMF_2932 0.12 -1.0
3,705,657 + DvMF_2932 0.36 -0.7
3,705,716 + DvMF_2932 0.48 -0.5

Or see this region's nucleotide sequence