Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2926

Experiment: MoLS4 minimal media with D,L-Cysteine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2925 and DvMF_2926 are separated by 149 nucleotidesDvMF_2926 and garR are separated by 422 nucleotides DvMF_2925: DvMF_2925 - 5-carboxymethyl-2-hydroxymuconate Delta-isomerase (RefSeq), at 3,695,113 to 3,695,895 _2925 DvMF_2926: DvMF_2926 - beta-lactamase domain protein (RefSeq), at 3,696,045 to 3,697,706 _2926 DvMF_2927: garR - tartronate semialdehyde reductase (RefSeq), at 3,698,129 to 3,699,028 garR Position (kb) 3696 3697 3698Strain fitness (log2 ratio) -2 -1 0 1at 3695.153 kb on - strandat 3695.153 kb on - strandat 3695.178 kb on + strandat 3695.360 kb on - strand, within DvMF_2925at 3695.365 kb on - strand, within DvMF_2925at 3695.434 kb on - strand, within DvMF_2925at 3695.509 kb on + strand, within DvMF_2925at 3695.697 kb on + strand, within DvMF_2925at 3695.912 kb on + strandat 3696.174 kb on + strandat 3696.258 kb on + strand, within DvMF_2926at 3696.266 kb on - strand, within DvMF_2926at 3696.369 kb on - strand, within DvMF_2926at 3696.423 kb on + strand, within DvMF_2926at 3696.442 kb on - strand, within DvMF_2926at 3696.602 kb on + strand, within DvMF_2926at 3696.793 kb on + strand, within DvMF_2926at 3696.994 kb on + strand, within DvMF_2926at 3697.055 kb on + strand, within DvMF_2926at 3697.270 kb on - strand, within DvMF_2926at 3697.355 kb on + strand, within DvMF_2926at 3697.453 kb on + strand, within DvMF_2926at 3697.453 kb on + strand, within DvMF_2926at 3697.680 kb on + strandat 3697.731 kb on + strandat 3697.757 kb on + strandat 3697.967 kb on - strandat 3698.126 kb on - strandat 3698.152 kb on + strandat 3698.395 kb on + strand, within garRat 3698.606 kb on - strand, within garR

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media with D,L-Cysteine
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3,695,153 - -2.5
3,695,153 - -1.1
3,695,178 + -0.7
3,695,360 - DvMF_2925 0.32 -0.9
3,695,365 - DvMF_2925 0.32 -0.8
3,695,434 - DvMF_2925 0.41 -1.0
3,695,509 + DvMF_2925 0.51 -1.4
3,695,697 + DvMF_2925 0.75 -1.3
3,695,912 + -0.7
3,696,174 + -1.5
3,696,258 + DvMF_2926 0.13 -1.6
3,696,266 - DvMF_2926 0.13 -2.4
3,696,369 - DvMF_2926 0.19 -1.5
3,696,423 + DvMF_2926 0.23 -1.7
3,696,442 - DvMF_2926 0.24 +1.5
3,696,602 + DvMF_2926 0.34 +0.2
3,696,793 + DvMF_2926 0.45 -1.9
3,696,994 + DvMF_2926 0.57 -0.8
3,697,055 + DvMF_2926 0.61 +0.9
3,697,270 - DvMF_2926 0.74 -1.1
3,697,355 + DvMF_2926 0.79 -1.5
3,697,453 + DvMF_2926 0.85 -1.5
3,697,453 + DvMF_2926 0.85 -0.9
3,697,680 + -2.2
3,697,731 + -2.0
3,697,757 + -1.1
3,697,967 - -0.2
3,698,126 - -0.3
3,698,152 + -0.7
3,698,395 + garR DvMF_2927 0.30 -0.6
3,698,606 - garR DvMF_2927 0.53 -1.0

Or see this region's nucleotide sequence