Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2409

Experiment: MoLS4 minimal media with D,L-Cysteine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2408 and DvMF_2409 overlap by 4 nucleotidesDvMF_2409 and DvMF_2410 are separated by 296 nucleotides DvMF_2408: DvMF_2408 - major facilitator superfamily MFS_1 (RefSeq), at 3,043,276 to 3,045,846 _2408 DvMF_2409: DvMF_2409 - hypothetical protein (RefSeq), at 3,045,843 to 3,047,543 _2409 DvMF_2410: DvMF_2410 - protein serine/threonine phosphatase (RefSeq), at 3,047,840 to 3,049,822 _2410 Position (kb) 3045 3046 3047 3048Strain fitness (log2 ratio) -2 -1 0 1at 3044.910 kb on - strand, within DvMF_2408at 3044.910 kb on - strand, within DvMF_2408at 3045.007 kb on + strand, within DvMF_2408at 3045.227 kb on - strand, within DvMF_2408at 3045.372 kb on - strand, within DvMF_2408at 3045.528 kb on + strand, within DvMF_2408at 3045.623 kb on - strandat 3045.661 kb on - strandat 3045.873 kb on - strandat 3045.888 kb on + strandat 3045.961 kb on + strandat 3045.961 kb on + strandat 3046.343 kb on + strand, within DvMF_2409at 3046.343 kb on + strand, within DvMF_2409at 3046.343 kb on + strand, within DvMF_2409at 3046.346 kb on - strand, within DvMF_2409at 3046.387 kb on + strand, within DvMF_2409at 3046.430 kb on - strand, within DvMF_2409at 3046.470 kb on - strand, within DvMF_2409at 3046.594 kb on + strand, within DvMF_2409at 3046.758 kb on - strand, within DvMF_2409at 3046.786 kb on - strand, within DvMF_2409at 3047.052 kb on + strand, within DvMF_2409at 3047.578 kb on + strandat 3047.586 kb on - strandat 3048.085 kb on - strand, within DvMF_2410at 3048.296 kb on + strand, within DvMF_2410at 3048.296 kb on + strand, within DvMF_2410at 3048.346 kb on + strand, within DvMF_2410at 3048.368 kb on - strand, within DvMF_2410

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media with D,L-Cysteine
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3,044,910 - DvMF_2408 0.64 -0.7
3,044,910 - DvMF_2408 0.64 -0.4
3,045,007 + DvMF_2408 0.67 -1.4
3,045,227 - DvMF_2408 0.76 -0.6
3,045,372 - DvMF_2408 0.82 +0.2
3,045,528 + DvMF_2408 0.88 -0.3
3,045,623 - +0.4
3,045,661 - -0.9
3,045,873 - -0.7
3,045,888 + -1.4
3,045,961 + -0.8
3,045,961 + -0.3
3,046,343 + DvMF_2409 0.29 -0.2
3,046,343 + DvMF_2409 0.29 -0.0
3,046,343 + DvMF_2409 0.29 -1.1
3,046,346 - DvMF_2409 0.30 -0.4
3,046,387 + DvMF_2409 0.32 -1.5
3,046,430 - DvMF_2409 0.35 -1.1
3,046,470 - DvMF_2409 0.37 -2.2
3,046,594 + DvMF_2409 0.44 -1.0
3,046,758 - DvMF_2409 0.54 -0.6
3,046,786 - DvMF_2409 0.55 -1.5
3,047,052 + DvMF_2409 0.71 -0.8
3,047,578 + -0.6
3,047,586 - -0.4
3,048,085 - DvMF_2410 0.12 -0.9
3,048,296 + DvMF_2410 0.23 -1.5
3,048,296 + DvMF_2410 0.23 -0.3
3,048,346 + DvMF_2410 0.26 +0.1
3,048,368 - DvMF_2410 0.27 -0.9

Or see this region's nucleotide sequence