Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2317

Experiment: MoLS4 minimal media with D,L-Cysteine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2315 and DvMF_2316 overlap by 29 nucleotidesDvMF_2316 and DvMF_2317 are separated by 42 nucleotidesDvMF_2317 and DvMF_2318 overlap by 10 nucleotides DvMF_2315: DvMF_2315 - Chorismate binding-like protein (RefSeq), at 2,913,768 to 2,915,411 _2315 DvMF_2316: DvMF_2316 - glutamine amidotransferase class-I (RefSeq), at 2,915,383 to 2,916,225 _2316 DvMF_2317: DvMF_2317 - protein of unknown function DUF152 (RefSeq), at 2,916,268 to 2,917,101 _2317 DvMF_2318: DvMF_2318 - 5-formyltetrahydrofolate cyclo-ligase (RefSeq), at 2,917,092 to 2,917,796 _2318 Position (kb) 2916 2917 2918Strain fitness (log2 ratio) -1 0 1at 2915.360 kb on - strandat 2915.364 kb on + strandat 2915.585 kb on - strand, within DvMF_2316at 2915.669 kb on + strand, within DvMF_2316at 2915.693 kb on - strand, within DvMF_2316at 2915.699 kb on - strand, within DvMF_2316at 2916.045 kb on + strand, within DvMF_2316at 2916.076 kb on - strand, within DvMF_2316at 2916.237 kb on - strandat 2916.255 kb on + strandat 2916.360 kb on + strand, within DvMF_2317at 2916.469 kb on + strand, within DvMF_2317at 2916.516 kb on + strand, within DvMF_2317at 2916.522 kb on + strand, within DvMF_2317at 2916.522 kb on + strand, within DvMF_2317at 2916.524 kb on - strand, within DvMF_2317at 2916.530 kb on - strand, within DvMF_2317at 2916.555 kb on + strand, within DvMF_2317at 2916.705 kb on + strand, within DvMF_2317at 2916.793 kb on - strand, within DvMF_2317at 2916.859 kb on + strand, within DvMF_2317at 2916.979 kb on - strand, within DvMF_2317at 2917.098 kb on - strandat 2917.301 kb on + strand, within DvMF_2318at 2917.375 kb on + strand, within DvMF_2318at 2917.390 kb on + strand, within DvMF_2318at 2917.749 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media with D,L-Cysteine
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2,915,360 - -0.5
2,915,364 + -0.3
2,915,585 - DvMF_2316 0.24 -1.3
2,915,669 + DvMF_2316 0.34 -0.2
2,915,693 - DvMF_2316 0.37 -0.4
2,915,699 - DvMF_2316 0.37 +0.1
2,916,045 + DvMF_2316 0.79 -0.9
2,916,076 - DvMF_2316 0.82 -0.7
2,916,237 - +0.0
2,916,255 + -1.0
2,916,360 + DvMF_2317 0.11 -0.3
2,916,469 + DvMF_2317 0.24 -0.4
2,916,516 + DvMF_2317 0.30 -0.5
2,916,522 + DvMF_2317 0.30 -0.5
2,916,522 + DvMF_2317 0.30 -0.8
2,916,524 - DvMF_2317 0.31 -0.3
2,916,530 - DvMF_2317 0.31 +0.4
2,916,555 + DvMF_2317 0.34 -0.4
2,916,705 + DvMF_2317 0.52 +1.1
2,916,793 - DvMF_2317 0.63 -0.9
2,916,859 + DvMF_2317 0.71 -0.3
2,916,979 - DvMF_2317 0.85 -0.1
2,917,098 - -1.0
2,917,301 + DvMF_2318 0.30 -0.5
2,917,375 + DvMF_2318 0.40 -1.4
2,917,390 + DvMF_2318 0.42 -1.3
2,917,749 + -0.1

Or see this region's nucleotide sequence