Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2222

Experiment: MoLS4 minimal media with D,L-Cysteine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2220 and DvMF_2221 are separated by 178 nucleotidesDvMF_2221 and DvMF_2222 overlap by 4 nucleotidesDvMF_2222 and DvMF_2223 are separated by 263 nucleotidesDvMF_2223 and DvMF_R0061 are separated by 112 nucleotidesDvMF_R0061 and DvMF_2224 are separated by 97 nucleotides DvMF_2220: DvMF_2220 - lipolytic protein G-D-S-L family (RefSeq), at 2,779,909 to 2,780,553 _2220 DvMF_2221: DvMF_2221 - ABC transporter related (RefSeq), at 2,780,732 to 2,781,490 _2221 DvMF_2222: DvMF_2222 - protein of unknown function DUF214 (RefSeq), at 2,781,487 to 2,784,294 _2222 DvMF_2223: DvMF_2223 - diacylglycerol kinase (RefSeq), at 2,784,558 to 2,784,920 _2223 DvMF_R0061: DvMF_R0061 - tRNA-Lys (RefSeq), at 2,785,033 to 2,785,108 _R0061 DvMF_2224: DvMF_2224 - seryl-tRNA synthetase (RefSeq), at 2,785,206 to 2,786,483 _2224 Position (kb) 2781 2782 2783 2784 2785Strain fitness (log2 ratio) -1 0 1at 2780.620 kb on - strandat 2780.803 kb on + strandat 2780.886 kb on + strand, within DvMF_2221at 2781.040 kb on + strand, within DvMF_2221at 2781.050 kb on - strand, within DvMF_2221at 2781.060 kb on + strand, within DvMF_2221at 2781.806 kb on + strand, within DvMF_2222at 2781.818 kb on + strand, within DvMF_2222at 2781.875 kb on + strand, within DvMF_2222at 2781.951 kb on + strand, within DvMF_2222at 2781.951 kb on + strand, within DvMF_2222at 2782.204 kb on - strand, within DvMF_2222at 2782.534 kb on + strand, within DvMF_2222at 2782.553 kb on - strand, within DvMF_2222at 2782.607 kb on - strand, within DvMF_2222at 2783.174 kb on - strand, within DvMF_2222at 2783.461 kb on + strand, within DvMF_2222at 2783.641 kb on + strand, within DvMF_2222at 2783.747 kb on - strand, within DvMF_2222at 2783.760 kb on - strand, within DvMF_2222at 2783.844 kb on + strand, within DvMF_2222at 2783.887 kb on - strand, within DvMF_2222at 2784.035 kb on - strandat 2784.102 kb on + strandat 2784.222 kb on - strandat 2784.369 kb on - strandat 2784.503 kb on + strandat 2784.555 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media with D,L-Cysteine
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2,780,620 - -0.2
2,780,803 + -0.3
2,780,886 + DvMF_2221 0.20 -0.1
2,781,040 + DvMF_2221 0.41 -0.9
2,781,050 - DvMF_2221 0.42 -0.2
2,781,060 + DvMF_2221 0.43 -0.2
2,781,806 + DvMF_2222 0.11 -0.5
2,781,818 + DvMF_2222 0.12 -0.7
2,781,875 + DvMF_2222 0.14 -0.5
2,781,951 + DvMF_2222 0.17 -0.2
2,781,951 + DvMF_2222 0.17 -0.0
2,782,204 - DvMF_2222 0.26 -0.9
2,782,534 + DvMF_2222 0.37 +0.6
2,782,553 - DvMF_2222 0.38 -0.5
2,782,607 - DvMF_2222 0.40 -1.2
2,783,174 - DvMF_2222 0.60 -0.5
2,783,461 + DvMF_2222 0.70 -0.4
2,783,641 + DvMF_2222 0.77 +0.3
2,783,747 - DvMF_2222 0.80 -0.1
2,783,760 - DvMF_2222 0.81 -0.5
2,783,844 + DvMF_2222 0.84 +0.2
2,783,887 - DvMF_2222 0.85 -0.3
2,784,035 - -1.4
2,784,102 + -1.0
2,784,222 - +0.1
2,784,369 - -0.7
2,784,503 + -0.6
2,784,555 + -0.7

Or see this region's nucleotide sequence