Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1660

Experiment: MoLS4 minimal media with D,L-Cysteine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1658 and DvMF_1659 overlap by 8 nucleotidesDvMF_1659 and DvMF_1660 are separated by 72 nucleotidesDvMF_1660 and DvMF_1661 are separated by 525 nucleotidesDvMF_1661 and DvMF_1662 overlap by 19 nucleotides DvMF_1658: DvMF_1658 - Terminase (RefSeq), at 2,034,968 to 2,036,665 _1658 DvMF_1659: DvMF_1659 - putative phage terminase, small subunit, P27 family (RefSeq), at 2,036,658 to 2,037,131 _1659 DvMF_1660: DvMF_1660 - HNH endonuclease (RefSeq), at 2,037,204 to 2,037,599 _1660 DvMF_1661: DvMF_1661 - hypothetical protein (RefSeq), at 2,038,125 to 2,038,472 _1661 DvMF_1662: DvMF_1662 - hypothetical protein (RefSeq), at 2,038,454 to 2,038,684 _1662 Position (kb) 2037 2038Strain fitness (log2 ratio) -2 -1 0 1at 2036.413 kb on + strand, within DvMF_1658at 2036.572 kb on - strandat 2036.635 kb on - strandat 2036.803 kb on + strand, within DvMF_1659at 2036.821 kb on + strand, within DvMF_1659at 2036.821 kb on + strand, within DvMF_1659at 2036.976 kb on - strand, within DvMF_1659at 2036.976 kb on - strand, within DvMF_1659at 2037.100 kb on - strandat 2037.201 kb on + strandat 2037.254 kb on - strand, within DvMF_1660at 2037.285 kb on - strand, within DvMF_1660at 2037.526 kb on - strand, within DvMF_1660at 2037.600 kb on - strandat 2037.772 kb on + strandat 2037.775 kb on - strandat 2037.780 kb on - strandat 2037.780 kb on - strandat 2037.825 kb on - strandat 2037.879 kb on - strandat 2038.111 kb on - strandat 2038.165 kb on + strand, within DvMF_1661at 2038.394 kb on - strand, within DvMF_1661at 2038.459 kb on - strandat 2038.505 kb on + strand, within DvMF_1662at 2038.523 kb on - strand, within DvMF_1662at 2038.551 kb on - strand, within DvMF_1662

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media with D,L-Cysteine
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2,036,413 + DvMF_1658 0.85 +0.7
2,036,572 - +0.0
2,036,635 - -0.4
2,036,803 + DvMF_1659 0.31 -0.4
2,036,821 + DvMF_1659 0.34 +1.7
2,036,821 + DvMF_1659 0.34 +0.1
2,036,976 - DvMF_1659 0.67 -0.2
2,036,976 - DvMF_1659 0.67 +0.3
2,037,100 - +0.5
2,037,201 + -0.0
2,037,254 - DvMF_1660 0.13 +0.6
2,037,285 - DvMF_1660 0.20 +0.5
2,037,526 - DvMF_1660 0.81 +0.2
2,037,600 - -0.4
2,037,772 + -0.1
2,037,775 - -0.5
2,037,780 - -0.6
2,037,780 - -2.2
2,037,825 - +0.1
2,037,879 - -0.4
2,038,111 - +0.1
2,038,165 + DvMF_1661 0.11 +0.1
2,038,394 - DvMF_1661 0.77 -1.4
2,038,459 - -0.3
2,038,505 + DvMF_1662 0.22 +0.4
2,038,523 - DvMF_1662 0.30 -1.1
2,038,551 - DvMF_1662 0.42 -0.6

Or see this region's nucleotide sequence