Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1195

Experiment: MoLS4 minimal media with D,L-Cysteine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1193 and DvMF_1194 are separated by 272 nucleotidesDvMF_1194 and DvMF_1195 are separated by 100 nucleotidesDvMF_1195 and DvMF_1196 are separated by 952 nucleotides DvMF_1193: DvMF_1193 - protein of unknown function DUF6 transmembrane (RefSeq), at 1,471,305 to 1,472,309 _1193 DvMF_1194: DvMF_1194 - GrpE protein (RefSeq), at 1,472,582 to 1,473,187 _1194 DvMF_1195: DvMF_1195 - heat-inducible transcription repressor HrcA (RefSeq), at 1,473,288 to 1,474,355 _1195 DvMF_1196: DvMF_1196 - sulfur relay protein, TusE/DsrC/DsvC family (RefSeq), at 1,475,308 to 1,475,625 _1196 Position (kb) 1473 1474 1475Strain fitness (log2 ratio) -1 0 1at 1473.157 kb on - strandat 1473.197 kb on - strandat 1473.492 kb on - strand, within DvMF_1195at 1473.531 kb on - strand, within DvMF_1195at 1473.533 kb on + strand, within DvMF_1195at 1474.095 kb on + strand, within DvMF_1195at 1474.331 kb on - strandat 1474.340 kb on + strandat 1474.359 kb on + strandat 1474.577 kb on - strandat 1474.623 kb on + strandat 1474.631 kb on - strandat 1474.722 kb on - strandat 1474.722 kb on - strandat 1474.731 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media with D,L-Cysteine
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1,473,157 - +1.4
1,473,197 - -0.6
1,473,492 - DvMF_1195 0.19 -0.9
1,473,531 - DvMF_1195 0.23 -1.2
1,473,533 + DvMF_1195 0.23 -0.2
1,474,095 + DvMF_1195 0.76 -0.7
1,474,331 - -0.1
1,474,340 + -0.2
1,474,359 + -1.5
1,474,577 - -0.4
1,474,623 + -1.1
1,474,631 - -0.9
1,474,722 - -0.6
1,474,722 - -0.8
1,474,731 - -0.6

Or see this region's nucleotide sequence