Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0644

Experiment: MoLS4 minimal media with D,L-Cysteine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0643 and DvMF_0644 are separated by 10 nucleotidesDvMF_0644 and DvMF_0645 are separated by 292 nucleotides DvMF_0643: DvMF_0643 - formate dehydrogenase, alpha subunit (RefSeq), at 770,931 to 773,969 _0643 DvMF_0644: DvMF_0644 - formate dehydrogenase, beta subunit, putative (RefSeq), at 773,980 to 774,627 _0644 DvMF_0645: DvMF_0645 - formate dehydrogenase accessory protein (RefSeq), at 774,920 to 775,933 _0645 Position (kb) 773 774 775Strain fitness (log2 ratio) -1 0 1at 773.257 kb on - strand, within DvMF_0643at 773.285 kb on + strand, within DvMF_0643at 773.345 kb on + strand, within DvMF_0643at 773.419 kb on - strand, within DvMF_0643at 773.495 kb on + strand, within DvMF_0643at 773.689 kb on + strandat 773.725 kb on + strandat 773.846 kb on - strandat 774.003 kb on + strandat 774.026 kb on + strandat 774.132 kb on + strand, within DvMF_0644at 774.164 kb on - strand, within DvMF_0644at 774.285 kb on + strand, within DvMF_0644at 774.293 kb on - strand, within DvMF_0644at 774.742 kb on + strandat 774.974 kb on + strandat 775.193 kb on - strand, within DvMF_0645at 775.193 kb on - strand, within DvMF_0645at 775.231 kb on - strand, within DvMF_0645

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media with D,L-Cysteine
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773,257 - DvMF_0643 0.77 -0.9
773,285 + DvMF_0643 0.77 +0.5
773,345 + DvMF_0643 0.79 -0.5
773,419 - DvMF_0643 0.82 +1.5
773,495 + DvMF_0643 0.84 -0.4
773,689 + -0.1
773,725 + -0.7
773,846 - -0.7
774,003 + +0.4
774,026 + -0.8
774,132 + DvMF_0644 0.23 -0.4
774,164 - DvMF_0644 0.28 -1.3
774,285 + DvMF_0644 0.47 -0.5
774,293 - DvMF_0644 0.48 -1.7
774,742 + -0.6
774,974 + -0.5
775,193 - DvMF_0645 0.27 -0.6
775,193 - DvMF_0645 0.27 -0.8
775,231 - DvMF_0645 0.31 -1.6

Or see this region's nucleotide sequence