Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0566

Experiment: MoLS4 minimal media with D,L-Cysteine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntaspA and DvMF_0566 are separated by 249 nucleotidesDvMF_0566 and DvMF_0567 are separated by 448 nucleotides DvMF_0565: aspA - aspartate ammonia-lyase (RefSeq), at 666,005 to 667,570 aspA DvMF_0566: DvMF_0566 - peptidyl-prolyl cis-trans isomerase cyclophilin type (RefSeq), at 667,820 to 668,419 _0566 DvMF_0567: DvMF_0567 - ATP-dependent chaperone ClpB (RefSeq), at 668,868 to 671,456 _0567 Position (kb) 667 668 669Strain fitness (log2 ratio) -2 -1 0 1at 667.083 kb on - strand, within aspAat 667.276 kb on - strand, within aspAat 667.284 kb on + strand, within aspAat 667.377 kb on + strand, within aspAat 667.731 kb on + strandat 667.843 kb on - strandat 667.891 kb on + strand, within DvMF_0566at 667.914 kb on + strand, within DvMF_0566at 667.922 kb on - strand, within DvMF_0566at 667.922 kb on - strand, within DvMF_0566at 667.922 kb on - strand, within DvMF_0566at 668.064 kb on - strand, within DvMF_0566at 668.637 kb on - strandat 668.652 kb on - strandat 668.657 kb on - strandat 668.929 kb on - strandat 668.940 kb on - strandat 669.288 kb on + strand, within DvMF_0567at 669.366 kb on + strand, within DvMF_0567

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media with D,L-Cysteine
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667,083 - aspA DvMF_0565 0.69 -0.2
667,276 - aspA DvMF_0565 0.81 -0.1
667,284 + aspA DvMF_0565 0.82 +0.1
667,377 + aspA DvMF_0565 0.88 +0.9
667,731 + -0.4
667,843 - -0.7
667,891 + DvMF_0566 0.12 -0.3
667,914 + DvMF_0566 0.16 -0.9
667,922 - DvMF_0566 0.17 -1.9
667,922 - DvMF_0566 0.17 -0.9
667,922 - DvMF_0566 0.17 -1.4
668,064 - DvMF_0566 0.41 -0.8
668,637 - -0.8
668,652 - -0.5
668,657 - -0.4
668,929 - -0.5
668,940 - +0.1
669,288 + DvMF_0567 0.16 -0.5
669,366 + DvMF_0567 0.19 +0.0

Or see this region's nucleotide sequence