Experiment: Pyruvate (fermenting) with Na2S as sulfur source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fd II and DVU0306 are separated by 93 nucleotides DVU0306 and DVU0307 are separated by 120 nucleotides DVU0307 and DVU0308 are separated by 391 nucleotides DVU0308 and DVU0309 are separated by 92 nucleotides
DVU0305: fd II - ferredoxin II (Sean Caffrey), at 350,415 to 350,609
fd II
DVU0306: DVU0306 - hypothetical protein (TIGR), at 350,703 to 351,320
DVU0306
DVU0307: DVU0307 - flagella basal body rod domain protein (TIGR), at 351,441 to 352,937
DVU0307
DVU0308: DVU0308 - membrane protein, putative (TIGR), at 353,329 to 353,763
DVU0308
DVU0309: DVU0309 - transcriptional regulator, LysR family (TIGR), at 353,856 to 354,776
DVU0309
Position (kb) 351
352
353 Strain fitness (log2 ratio) -2
-1
0
1
2 at 350.455 kb on - strand, within fd II at 350.479 kb on + strand, within fd II at 350.502 kb on - strand, within fd II at 350.507 kb on - strand, within fd II at 350.640 kb on + strand at 350.653 kb on - strand at 350.716 kb on + strand at 350.788 kb on - strand, within DVU0306 at 350.813 kb on - strand, within DVU0306 at 350.831 kb on + strand, within DVU0306 at 350.854 kb on - strand, within DVU0306 at 350.989 kb on - strand, within DVU0306 at 351.067 kb on - strand, within DVU0306 at 351.114 kb on - strand, within DVU0306 at 351.174 kb on - strand, within DVU0306 at 351.210 kb on + strand, within DVU0306 at 351.230 kb on + strand, within DVU0306 at 351.254 kb on - strand, within DVU0306 at 351.292 kb on - strand at 351.388 kb on - strand at 351.453 kb on + strand at 351.453 kb on + strand at 351.460 kb on - strand at 351.479 kb on - strand at 351.493 kb on - strand at 351.501 kb on - strand at 351.532 kb on - strand at 351.546 kb on - strand at 351.598 kb on + strand, within DVU0307 at 351.608 kb on - strand, within DVU0307 at 351.634 kb on + strand, within DVU0307 at 351.649 kb on - strand, within DVU0307 at 351.747 kb on - strand, within DVU0307 at 351.756 kb on + strand, within DVU0307 at 351.756 kb on + strand, within DVU0307 at 351.756 kb on + strand, within DVU0307 at 351.784 kb on - strand, within DVU0307 at 351.830 kb on - strand, within DVU0307 at 351.950 kb on - strand, within DVU0307 at 351.990 kb on - strand, within DVU0307 at 351.990 kb on - strand, within DVU0307 at 352.057 kb on + strand, within DVU0307 at 352.070 kb on - strand, within DVU0307 at 352.107 kb on - strand, within DVU0307 at 352.152 kb on + strand, within DVU0307 at 352.410 kb on - strand, within DVU0307 at 352.436 kb on - strand, within DVU0307 at 352.453 kb on - strand, within DVU0307 at 352.555 kb on + strand, within DVU0307 at 352.594 kb on + strand, within DVU0307 at 352.594 kb on + strand, within DVU0307 at 352.639 kb on - strand, within DVU0307 at 352.639 kb on - strand, within DVU0307 at 352.718 kb on - strand, within DVU0307 at 352.771 kb on - strand, within DVU0307 at 352.809 kb on - strand at 352.963 kb on + strand at 352.981 kb on - strand at 352.996 kb on - strand at 353.047 kb on + strand at 353.184 kb on + strand at 353.344 kb on - strand at 353.371 kb on + strand at 353.403 kb on - strand, within DVU0308 at 353.412 kb on + strand, within DVU0308 at 353.434 kb on - strand, within DVU0308 at 353.458 kb on + strand, within DVU0308 at 353.579 kb on + strand, within DVU0308 at 353.829 kb on - strand at 353.856 kb on + strand at 353.864 kb on - strand at 353.864 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate (fermenting) with Na2S as sulfur source remove 350,455 - fd II DVU0305 0.21 -1.1 350,479 + fd II DVU0305 0.33 -0.4 350,502 - fd II DVU0305 0.45 -0.6 350,507 - fd II DVU0305 0.47 +2.2 350,640 + +1.3 350,653 - -0.2 350,716 + -0.5 350,788 - DVU0306 0.14 -2.3 350,813 - DVU0306 0.18 +0.1 350,831 + DVU0306 0.21 -0.1 350,854 - DVU0306 0.24 -1.2 350,989 - DVU0306 0.46 +0.4 351,067 - DVU0306 0.59 +0.1 351,114 - DVU0306 0.67 -0.2 351,174 - DVU0306 0.76 +0.0 351,210 + DVU0306 0.82 -0.4 351,230 + DVU0306 0.85 -0.4 351,254 - DVU0306 0.89 -0.4 351,292 - -0.6 351,388 - +0.3 351,453 + -0.5 351,453 + +0.5 351,460 - -1.5 351,479 - +0.9 351,493 - +1.0 351,501 - +1.3 351,532 - +0.9 351,546 - -0.5 351,598 + DVU0307 0.10 +0.9 351,608 - DVU0307 0.11 +1.0 351,634 + DVU0307 0.13 +0.9 351,649 - DVU0307 0.14 +1.7 351,747 - DVU0307 0.20 +0.5 351,756 + DVU0307 0.21 +1.4 351,756 + DVU0307 0.21 -1.0 351,756 + DVU0307 0.21 +0.9 351,784 - DVU0307 0.23 +1.1 351,830 - DVU0307 0.26 +1.5 351,950 - DVU0307 0.34 +0.7 351,990 - DVU0307 0.37 +1.0 351,990 - DVU0307 0.37 +0.6 352,057 + DVU0307 0.41 +1.0 352,070 - DVU0307 0.42 +0.9 352,107 - DVU0307 0.44 -2.1 352,152 + DVU0307 0.47 +1.4 352,410 - DVU0307 0.65 +1.2 352,436 - DVU0307 0.66 +0.3 352,453 - DVU0307 0.68 +0.1 352,555 + DVU0307 0.74 +0.2 352,594 + DVU0307 0.77 -0.8 352,594 + DVU0307 0.77 +0.7 352,639 - DVU0307 0.80 -0.4 352,639 - DVU0307 0.80 +0.9 352,718 - DVU0307 0.85 +0.8 352,771 - DVU0307 0.89 +1.0 352,809 - +1.0 352,963 + -0.9 352,981 - -0.2 352,996 - -0.9 353,047 + -0.4 353,184 + -1.3 353,344 - +0.2 353,371 + -0.7 353,403 - DVU0308 0.17 -0.6 353,412 + DVU0308 0.19 +0.9 353,434 - DVU0308 0.24 -1.2 353,458 + DVU0308 0.30 -1.3 353,579 + DVU0308 0.57 -1.1 353,829 - +0.8 353,856 + +0.3 353,864 - +1.4 353,864 - +0.4
Or see this region's nucleotide sequence