Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0097

Experiment: Pyruvate (fermenting) with Na2S as sulfur source

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpotD-1 and potC are separated by 1 nucleotidespotC and potB are separated by 2 nucleotidespotB and potA overlap by 14 nucleotides DVU0095: potD-1 - polyamine ABC transporter, periplasmic polyamine-binding protein (TIGR), at 125,677 to 126,714 potD-1 DVU0096: potC - polyamine ABC transporter, permease protein (TIGR), at 126,716 to 127,489 potC DVU0097: potB - polyamine ABC transporter, permease protein (TIGR), at 127,492 to 128,379 potB DVU0098: potA - polyamine ABC transporter, ATP-binding protein (TIGR), at 128,366 to 129,472 potA Position (kb) 127 128 129Strain fitness (log2 ratio) -2 -1 0 1 2at 126.553 kb on + strand, within potD-1at 126.561 kb on - strand, within potD-1at 126.592 kb on + strand, within potD-1at 126.592 kb on + strand, within potD-1at 126.600 kb on - strand, within potD-1at 126.633 kb on - strandat 126.671 kb on + strandat 126.679 kb on - strandat 126.679 kb on - strandat 126.731 kb on - strandat 126.734 kb on + strandat 126.754 kb on + strandat 126.760 kb on + strandat 126.884 kb on + strand, within potCat 126.889 kb on - strand, within potCat 126.954 kb on - strand, within potCat 126.999 kb on - strand, within potCat 127.008 kb on + strand, within potCat 127.027 kb on - strand, within potCat 127.149 kb on + strand, within potCat 127.171 kb on + strand, within potCat 127.187 kb on - strand, within potCat 127.194 kb on + strand, within potCat 127.199 kb on + strand, within potCat 127.199 kb on + strand, within potCat 127.199 kb on + strand, within potCat 127.207 kb on - strand, within potCat 127.207 kb on - strand, within potCat 127.207 kb on - strand, within potCat 127.207 kb on - strand, within potCat 127.304 kb on + strand, within potCat 127.312 kb on - strand, within potCat 127.387 kb on + strand, within potCat 127.395 kb on - strand, within potCat 127.417 kb on + strandat 127.425 kb on - strandat 127.426 kb on - strandat 127.450 kb on - strandat 127.451 kb on - strandat 127.453 kb on + strandat 127.461 kb on - strandat 127.520 kb on - strandat 127.539 kb on - strandat 127.574 kb on + strandat 127.582 kb on - strand, within potBat 127.830 kb on - strand, within potBat 127.850 kb on - strand, within potBat 127.889 kb on + strand, within potBat 127.913 kb on + strand, within potBat 127.993 kb on - strand, within potBat 128.120 kb on + strand, within potBat 128.125 kb on + strand, within potBat 128.125 kb on + strand, within potBat 128.222 kb on + strand, within potBat 128.262 kb on - strand, within potBat 128.300 kb on + strandat 128.363 kb on + strandat 128.516 kb on + strand, within potAat 128.529 kb on + strand, within potAat 128.531 kb on + strand, within potAat 128.537 kb on - strand, within potAat 128.537 kb on - strand, within potAat 128.539 kb on - strand, within potAat 128.539 kb on - strand, within potAat 128.587 kb on + strand, within potAat 128.608 kb on + strand, within potAat 128.616 kb on - strand, within potAat 128.636 kb on - strand, within potAat 128.643 kb on - strand, within potAat 128.679 kb on - strand, within potAat 128.687 kb on + strand, within potAat 128.710 kb on - strand, within potAat 128.772 kb on + strand, within potAat 128.772 kb on + strand, within potAat 128.819 kb on - strand, within potAat 128.905 kb on - strand, within potAat 128.905 kb on - strand, within potAat 128.942 kb on - strand, within potAat 128.969 kb on - strand, within potAat 128.981 kb on - strand, within potAat 128.983 kb on - strand, within potAat 129.011 kb on + strand, within potAat 129.051 kb on - strand, within potAat 129.251 kb on + strand, within potAat 129.322 kb on + strand, within potAat 129.351 kb on + strand, within potA

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate (fermenting) with Na2S as sulfur source
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126,553 + potD-1 DVU0095 0.84 -0.1
126,561 - potD-1 DVU0095 0.85 +0.5
126,592 + potD-1 DVU0095 0.88 -0.5
126,592 + potD-1 DVU0095 0.88 +0.7
126,600 - potD-1 DVU0095 0.89 -1.8
126,633 - +0.2
126,671 + +0.2
126,679 - -0.1
126,679 - +0.4
126,731 - +0.4
126,734 + -0.0
126,754 + +0.0
126,760 + -0.5
126,884 + potC DVU0096 0.22 -0.3
126,889 - potC DVU0096 0.22 -1.5
126,954 - potC DVU0096 0.31 +1.7
126,999 - potC DVU0096 0.37 +0.0
127,008 + potC DVU0096 0.38 -0.5
127,027 - potC DVU0096 0.40 +0.3
127,149 + potC DVU0096 0.56 -0.5
127,171 + potC DVU0096 0.59 +0.9
127,187 - potC DVU0096 0.61 -0.2
127,194 + potC DVU0096 0.62 -0.3
127,199 + potC DVU0096 0.62 +0.2
127,199 + potC DVU0096 0.62 +0.3
127,199 + potC DVU0096 0.62 -1.4
127,207 - potC DVU0096 0.63 +0.4
127,207 - potC DVU0096 0.63 -0.3
127,207 - potC DVU0096 0.63 -0.0
127,207 - potC DVU0096 0.63 -0.4
127,304 + potC DVU0096 0.76 -0.4
127,312 - potC DVU0096 0.77 -0.3
127,387 + potC DVU0096 0.87 +0.8
127,395 - potC DVU0096 0.88 -0.5
127,417 + +0.2
127,425 - -0.2
127,426 - -0.1
127,450 - -0.0
127,451 - +0.5
127,453 + +0.2
127,461 - +0.5
127,520 - +0.9
127,539 - +0.5
127,574 + -0.0
127,582 - potB DVU0097 0.10 +0.3
127,830 - potB DVU0097 0.38 +1.8
127,850 - potB DVU0097 0.40 +1.4
127,889 + potB DVU0097 0.45 -0.1
127,913 + potB DVU0097 0.47 -0.8
127,993 - potB DVU0097 0.56 -0.2
128,120 + potB DVU0097 0.71 +1.1
128,125 + potB DVU0097 0.71 -0.3
128,125 + potB DVU0097 0.71 +0.4
128,222 + potB DVU0097 0.82 -1.9
128,262 - potB DVU0097 0.87 +0.1
128,300 + +0.2
128,363 + -0.4
128,516 + potA DVU0098 0.14 -0.2
128,529 + potA DVU0098 0.15 +0.8
128,531 + potA DVU0098 0.15 -1.5
128,537 - potA DVU0098 0.15 +0.2
128,537 - potA DVU0098 0.15 +1.1
128,539 - potA DVU0098 0.16 +0.4
128,539 - potA DVU0098 0.16 -0.0
128,587 + potA DVU0098 0.20 -0.2
128,608 + potA DVU0098 0.22 +0.2
128,616 - potA DVU0098 0.23 +0.8
128,636 - potA DVU0098 0.24 +0.3
128,643 - potA DVU0098 0.25 +0.0
128,679 - potA DVU0098 0.28 -0.6
128,687 + potA DVU0098 0.29 +0.1
128,710 - potA DVU0098 0.31 +0.3
128,772 + potA DVU0098 0.37 -0.3
128,772 + potA DVU0098 0.37 -1.6
128,819 - potA DVU0098 0.41 +0.1
128,905 - potA DVU0098 0.49 +0.6
128,905 - potA DVU0098 0.49 -0.4
128,942 - potA DVU0098 0.52 -0.3
128,969 - potA DVU0098 0.54 +2.6
128,981 - potA DVU0098 0.56 +0.0
128,983 - potA DVU0098 0.56 +0.3
129,011 + potA DVU0098 0.58 +0.2
129,051 - potA DVU0098 0.62 -0.6
129,251 + potA DVU0098 0.80 +0.7
129,322 + potA DVU0098 0.86 -0.1
129,351 + potA DVU0098 0.89 +0.1

Or see this region's nucleotide sequence