Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3894

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3892 and Pf6N2E2_3893 are separated by 78 nucleotidesPf6N2E2_3893 and Pf6N2E2_3894 are separated by 45 nucleotidesPf6N2E2_3894 and Pf6N2E2_3895 are separated by 107 nucleotides Pf6N2E2_3892 - FIG01270322: hypothetical protein, at 4,525,338 to 4,525,817 _3892 Pf6N2E2_3893 - putative 4-hydroxybenzoyl-CoA thioesterase, at 4,525,896 to 4,526,315 _3893 Pf6N2E2_3894 - Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3), at 4,526,361 to 4,527,587 _3894 Pf6N2E2_3895 - ATP-dependent DNA helicase, RecQ family, at 4,527,695 to 4,529,623 _3895 Position (kb) 4526 4527 4528Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4525.403 kb on + strand, within Pf6N2E2_3892at 4525.491 kb on - strand, within Pf6N2E2_3892at 4525.680 kb on + strand, within Pf6N2E2_3892at 4525.680 kb on + strand, within Pf6N2E2_3892at 4525.680 kb on + strand, within Pf6N2E2_3892at 4525.680 kb on + strand, within Pf6N2E2_3892at 4525.680 kb on + strand, within Pf6N2E2_3892at 4525.680 kb on + strand, within Pf6N2E2_3892at 4525.680 kb on + strand, within Pf6N2E2_3892at 4525.680 kb on + strand, within Pf6N2E2_3892at 4525.680 kb on + strand, within Pf6N2E2_3892at 4525.680 kb on + strand, within Pf6N2E2_3892at 4525.680 kb on + strand, within Pf6N2E2_3892at 4525.680 kb on + strand, within Pf6N2E2_3892at 4525.680 kb on + strand, within Pf6N2E2_3892at 4525.680 kb on + strand, within Pf6N2E2_3892at 4525.680 kb on + strand, within Pf6N2E2_3892at 4525.680 kb on + strand, within Pf6N2E2_3892at 4525.680 kb on + strand, within Pf6N2E2_3892at 4525.680 kb on + strand, within Pf6N2E2_3892at 4525.681 kb on - strand, within Pf6N2E2_3892at 4525.681 kb on - strand, within Pf6N2E2_3892at 4525.681 kb on - strand, within Pf6N2E2_3892at 4525.681 kb on - strand, within Pf6N2E2_3892at 4525.681 kb on - strand, within Pf6N2E2_3892at 4525.681 kb on - strand, within Pf6N2E2_3892at 4525.681 kb on - strand, within Pf6N2E2_3892at 4525.681 kb on - strand, within Pf6N2E2_3892at 4525.681 kb on - strand, within Pf6N2E2_3892at 4525.681 kb on - strand, within Pf6N2E2_3892at 4525.713 kb on + strand, within Pf6N2E2_3892at 4525.714 kb on - strand, within Pf6N2E2_3892at 4525.714 kb on - strand, within Pf6N2E2_3892at 4525.740 kb on + strand, within Pf6N2E2_3892at 4525.743 kb on + strand, within Pf6N2E2_3892at 4525.743 kb on + strand, within Pf6N2E2_3892at 4525.744 kb on - strand, within Pf6N2E2_3892at 4525.803 kb on + strandat 4525.803 kb on + strandat 4525.807 kb on - strandat 4525.829 kb on + strandat 4525.926 kb on + strandat 4525.927 kb on - strandat 4525.974 kb on + strand, within Pf6N2E2_3893at 4525.974 kb on + strand, within Pf6N2E2_3893at 4525.975 kb on - strand, within Pf6N2E2_3893at 4525.975 kb on - strand, within Pf6N2E2_3893at 4525.975 kb on - strand, within Pf6N2E2_3893at 4525.975 kb on - strand, within Pf6N2E2_3893at 4526.039 kb on - strand, within Pf6N2E2_3893at 4526.116 kb on + strand, within Pf6N2E2_3893at 4526.116 kb on + strand, within Pf6N2E2_3893at 4526.117 kb on - strand, within Pf6N2E2_3893at 4526.117 kb on - strand, within Pf6N2E2_3893at 4526.117 kb on - strand, within Pf6N2E2_3893at 4526.117 kb on - strand, within Pf6N2E2_3893at 4526.117 kb on - strand, within Pf6N2E2_3893at 4526.117 kb on - strand, within Pf6N2E2_3893at 4526.117 kb on - strand, within Pf6N2E2_3893at 4526.117 kb on - strand, within Pf6N2E2_3893at 4526.117 kb on - strand, within Pf6N2E2_3893at 4526.191 kb on + strand, within Pf6N2E2_3893at 4526.191 kb on + strand, within Pf6N2E2_3893at 4526.191 kb on + strand, within Pf6N2E2_3893at 4526.191 kb on + strand, within Pf6N2E2_3893at 4526.191 kb on + strand, within Pf6N2E2_3893at 4526.192 kb on - strand, within Pf6N2E2_3893at 4526.192 kb on - strand, within Pf6N2E2_3893at 4526.192 kb on - strand, within Pf6N2E2_3893at 4526.192 kb on - strand, within Pf6N2E2_3893at 4526.192 kb on - strand, within Pf6N2E2_3893at 4526.192 kb on - strand, within Pf6N2E2_3893at 4526.192 kb on - strand, within Pf6N2E2_3893at 4526.195 kb on + strand, within Pf6N2E2_3893at 4526.195 kb on + strand, within Pf6N2E2_3893at 4526.196 kb on - strand, within Pf6N2E2_3893at 4526.196 kb on - strand, within Pf6N2E2_3893at 4526.196 kb on - strand, within Pf6N2E2_3893at 4526.222 kb on - strand, within Pf6N2E2_3893at 4526.222 kb on - strand, within Pf6N2E2_3893at 4526.222 kb on - strand, within Pf6N2E2_3893at 4526.224 kb on + strand, within Pf6N2E2_3893at 4526.224 kb on + strand, within Pf6N2E2_3893at 4526.224 kb on + strand, within Pf6N2E2_3893at 4526.224 kb on + strand, within Pf6N2E2_3893at 4526.224 kb on + strand, within Pf6N2E2_3893at 4526.224 kb on + strand, within Pf6N2E2_3893at 4526.224 kb on + strand, within Pf6N2E2_3893at 4526.225 kb on - strand, within Pf6N2E2_3893at 4526.225 kb on - strand, within Pf6N2E2_3893at 4526.225 kb on - strand, within Pf6N2E2_3893at 4526.225 kb on - strand, within Pf6N2E2_3893at 4526.248 kb on + strand, within Pf6N2E2_3893at 4526.248 kb on + strand, within Pf6N2E2_3893at 4526.249 kb on - strand, within Pf6N2E2_3893at 4526.277 kb on - strandat 4526.277 kb on - strandat 4526.670 kb on + strand, within Pf6N2E2_3894at 4526.743 kb on + strand, within Pf6N2E2_3894at 4526.744 kb on - strand, within Pf6N2E2_3894at 4526.749 kb on + strand, within Pf6N2E2_3894at 4526.749 kb on + strand, within Pf6N2E2_3894at 4526.749 kb on + strand, within Pf6N2E2_3894at 4526.749 kb on + strand, within Pf6N2E2_3894at 4526.750 kb on - strand, within Pf6N2E2_3894at 4526.750 kb on - strand, within Pf6N2E2_3894at 4526.750 kb on - strand, within Pf6N2E2_3894at 4526.750 kb on - strand, within Pf6N2E2_3894at 4526.750 kb on - strand, within Pf6N2E2_3894at 4526.750 kb on - strand, within Pf6N2E2_3894at 4526.806 kb on - strand, within Pf6N2E2_3894at 4526.884 kb on + strand, within Pf6N2E2_3894at 4526.885 kb on - strand, within Pf6N2E2_3894at 4526.986 kb on + strand, within Pf6N2E2_3894at 4526.986 kb on + strand, within Pf6N2E2_3894at 4526.986 kb on + strand, within Pf6N2E2_3894at 4526.986 kb on + strand, within Pf6N2E2_3894at 4526.986 kb on + strand, within Pf6N2E2_3894at 4526.987 kb on - strand, within Pf6N2E2_3894at 4526.987 kb on - strand, within Pf6N2E2_3894at 4526.987 kb on - strand, within Pf6N2E2_3894at 4526.987 kb on - strand, within Pf6N2E2_3894at 4526.987 kb on - strand, within Pf6N2E2_3894at 4526.987 kb on - strand, within Pf6N2E2_3894at 4526.987 kb on - strand, within Pf6N2E2_3894at 4527.343 kb on + strand, within Pf6N2E2_3894at 4527.424 kb on + strand, within Pf6N2E2_3894at 4527.424 kb on + strand, within Pf6N2E2_3894at 4527.424 kb on + strand, within Pf6N2E2_3894at 4527.424 kb on + strand, within Pf6N2E2_3894at 4527.424 kb on + strand, within Pf6N2E2_3894at 4527.424 kb on + strand, within Pf6N2E2_3894at 4527.424 kb on + strand, within Pf6N2E2_3894at 4527.425 kb on - strand, within Pf6N2E2_3894at 4527.425 kb on - strand, within Pf6N2E2_3894at 4527.425 kb on - strand, within Pf6N2E2_3894at 4527.425 kb on - strand, within Pf6N2E2_3894at 4527.425 kb on - strand, within Pf6N2E2_3894at 4527.657 kb on - strandat 4527.739 kb on - strandat 4527.756 kb on + strandat 4527.757 kb on - strandat 4527.757 kb on - strandat 4528.008 kb on + strand, within Pf6N2E2_3895at 4528.009 kb on - strand, within Pf6N2E2_3895at 4528.104 kb on + strand, within Pf6N2E2_3895at 4528.104 kb on + strand, within Pf6N2E2_3895at 4528.104 kb on + strand, within Pf6N2E2_3895at 4528.104 kb on + strand, within Pf6N2E2_3895at 4528.104 kb on + strand, within Pf6N2E2_3895at 4528.105 kb on - strand, within Pf6N2E2_3895at 4528.105 kb on - strand, within Pf6N2E2_3895at 4528.105 kb on - strand, within Pf6N2E2_3895at 4528.105 kb on - strand, within Pf6N2E2_3895at 4528.105 kb on - strand, within Pf6N2E2_3895at 4528.105 kb on - strand, within Pf6N2E2_3895at 4528.105 kb on - strand, within Pf6N2E2_3895at 4528.135 kb on + strand, within Pf6N2E2_3895at 4528.161 kb on + strand, within Pf6N2E2_3895at 4528.161 kb on + strand, within Pf6N2E2_3895at 4528.161 kb on + strand, within Pf6N2E2_3895at 4528.161 kb on + strand, within Pf6N2E2_3895at 4528.162 kb on - strand, within Pf6N2E2_3895at 4528.162 kb on - strand, within Pf6N2E2_3895at 4528.215 kb on + strand, within Pf6N2E2_3895at 4528.215 kb on + strand, within Pf6N2E2_3895at 4528.215 kb on + strand, within Pf6N2E2_3895at 4528.216 kb on - strand, within Pf6N2E2_3895at 4528.216 kb on - strand, within Pf6N2E2_3895at 4528.216 kb on - strand, within Pf6N2E2_3895at 4528.216 kb on - strand, within Pf6N2E2_3895at 4528.254 kb on + strand, within Pf6N2E2_3895at 4528.263 kb on + strand, within Pf6N2E2_3895at 4528.263 kb on + strand, within Pf6N2E2_3895at 4528.264 kb on - strand, within Pf6N2E2_3895at 4528.410 kb on + strand, within Pf6N2E2_3895at 4528.410 kb on + strand, within Pf6N2E2_3895at 4528.410 kb on + strand, within Pf6N2E2_3895at 4528.411 kb on - strand, within Pf6N2E2_3895at 4528.416 kb on + strand, within Pf6N2E2_3895

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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4,525,403 + Pf6N2E2_3892 0.14 -0.8
4,525,491 - Pf6N2E2_3892 0.32 -1.6
4,525,680 + Pf6N2E2_3892 0.71 -0.5
4,525,680 + Pf6N2E2_3892 0.71 +0.9
4,525,680 + Pf6N2E2_3892 0.71 +0.1
4,525,680 + Pf6N2E2_3892 0.71 -0.2
4,525,680 + Pf6N2E2_3892 0.71 +0.9
4,525,680 + Pf6N2E2_3892 0.71 +0.2
4,525,680 + Pf6N2E2_3892 0.71 -0.4
4,525,680 + Pf6N2E2_3892 0.71 -2.0
4,525,680 + Pf6N2E2_3892 0.71 +0.8
4,525,680 + Pf6N2E2_3892 0.71 -0.8
4,525,680 + Pf6N2E2_3892 0.71 +0.4
4,525,680 + Pf6N2E2_3892 0.71 +0.4
4,525,680 + Pf6N2E2_3892 0.71 +0.4
4,525,680 + Pf6N2E2_3892 0.71 -1.4
4,525,680 + Pf6N2E2_3892 0.71 +0.6
4,525,680 + Pf6N2E2_3892 0.71 +0.5
4,525,680 + Pf6N2E2_3892 0.71 -1.1
4,525,680 + Pf6N2E2_3892 0.71 -0.2
4,525,681 - Pf6N2E2_3892 0.71 +0.6
4,525,681 - Pf6N2E2_3892 0.71 -0.2
4,525,681 - Pf6N2E2_3892 0.71 +0.3
4,525,681 - Pf6N2E2_3892 0.71 -0.6
4,525,681 - Pf6N2E2_3892 0.71 -1.2
4,525,681 - Pf6N2E2_3892 0.71 -0.2
4,525,681 - Pf6N2E2_3892 0.71 +0.1
4,525,681 - Pf6N2E2_3892 0.71 -0.8
4,525,681 - Pf6N2E2_3892 0.71 -0.7
4,525,681 - Pf6N2E2_3892 0.71 +0.9
4,525,713 + Pf6N2E2_3892 0.78 -0.0
4,525,714 - Pf6N2E2_3892 0.78 +0.1
4,525,714 - Pf6N2E2_3892 0.78 +0.6
4,525,740 + Pf6N2E2_3892 0.84 +1.0
4,525,743 + Pf6N2E2_3892 0.84 +0.5
4,525,743 + Pf6N2E2_3892 0.84 +0.1
4,525,744 - Pf6N2E2_3892 0.85 +0.3
4,525,803 + +0.1
4,525,803 + -0.8
4,525,807 - +0.6
4,525,829 + -0.1
4,525,926 + -1.4
4,525,927 - -0.4
4,525,974 + Pf6N2E2_3893 0.19 +2.2
4,525,974 + Pf6N2E2_3893 0.19 +0.8
4,525,975 - Pf6N2E2_3893 0.19 -0.7
4,525,975 - Pf6N2E2_3893 0.19 +0.8
4,525,975 - Pf6N2E2_3893 0.19 -1.5
4,525,975 - Pf6N2E2_3893 0.19 -1.9
4,526,039 - Pf6N2E2_3893 0.34 -0.2
4,526,116 + Pf6N2E2_3893 0.52 +0.4
4,526,116 + Pf6N2E2_3893 0.52 +0.4
4,526,117 - Pf6N2E2_3893 0.53 -0.3
4,526,117 - Pf6N2E2_3893 0.53 -1.2
4,526,117 - Pf6N2E2_3893 0.53 -0.9
4,526,117 - Pf6N2E2_3893 0.53 +0.0
4,526,117 - Pf6N2E2_3893 0.53 -0.3
4,526,117 - Pf6N2E2_3893 0.53 -1.1
4,526,117 - Pf6N2E2_3893 0.53 -0.1
4,526,117 - Pf6N2E2_3893 0.53 +0.0
4,526,117 - Pf6N2E2_3893 0.53 -1.5
4,526,191 + Pf6N2E2_3893 0.70 -1.2
4,526,191 + Pf6N2E2_3893 0.70 -0.5
4,526,191 + Pf6N2E2_3893 0.70 +0.0
4,526,191 + Pf6N2E2_3893 0.70 -0.1
4,526,191 + Pf6N2E2_3893 0.70 -0.7
4,526,192 - Pf6N2E2_3893 0.70 +0.3
4,526,192 - Pf6N2E2_3893 0.70 -1.1
4,526,192 - Pf6N2E2_3893 0.70 +0.7
4,526,192 - Pf6N2E2_3893 0.70 -0.4
4,526,192 - Pf6N2E2_3893 0.70 +0.7
4,526,192 - Pf6N2E2_3893 0.70 -4.1
4,526,192 - Pf6N2E2_3893 0.70 +0.5
4,526,195 + Pf6N2E2_3893 0.71 +0.7
4,526,195 + Pf6N2E2_3893 0.71 +1.1
4,526,196 - Pf6N2E2_3893 0.71 -0.7
4,526,196 - Pf6N2E2_3893 0.71 +0.5
4,526,196 - Pf6N2E2_3893 0.71 -1.0
4,526,222 - Pf6N2E2_3893 0.78 -0.1
4,526,222 - Pf6N2E2_3893 0.78 +0.8
4,526,222 - Pf6N2E2_3893 0.78 +0.4
4,526,224 + Pf6N2E2_3893 0.78 +2.5
4,526,224 + Pf6N2E2_3893 0.78 +0.1
4,526,224 + Pf6N2E2_3893 0.78 +0.3
4,526,224 + Pf6N2E2_3893 0.78 +0.4
4,526,224 + Pf6N2E2_3893 0.78 +0.3
4,526,224 + Pf6N2E2_3893 0.78 +0.5
4,526,224 + Pf6N2E2_3893 0.78 -1.2
4,526,225 - Pf6N2E2_3893 0.78 +0.2
4,526,225 - Pf6N2E2_3893 0.78 +0.1
4,526,225 - Pf6N2E2_3893 0.78 -0.1
4,526,225 - Pf6N2E2_3893 0.78 +0.5
4,526,248 + Pf6N2E2_3893 0.84 -0.0
4,526,248 + Pf6N2E2_3893 0.84 -0.2
4,526,249 - Pf6N2E2_3893 0.84 -0.3
4,526,277 - +0.6
4,526,277 - -0.6
4,526,670 + Pf6N2E2_3894 0.25 -1.8
4,526,743 + Pf6N2E2_3894 0.31 +0.7
4,526,744 - Pf6N2E2_3894 0.31 -2.4
4,526,749 + Pf6N2E2_3894 0.32 +0.8
4,526,749 + Pf6N2E2_3894 0.32 -2.0
4,526,749 + Pf6N2E2_3894 0.32 -0.8
4,526,749 + Pf6N2E2_3894 0.32 +0.1
4,526,750 - Pf6N2E2_3894 0.32 -0.8
4,526,750 - Pf6N2E2_3894 0.32 +1.1
4,526,750 - Pf6N2E2_3894 0.32 -0.1
4,526,750 - Pf6N2E2_3894 0.32 +1.3
4,526,750 - Pf6N2E2_3894 0.32 -0.2
4,526,750 - Pf6N2E2_3894 0.32 +0.8
4,526,806 - Pf6N2E2_3894 0.36 +2.5
4,526,884 + Pf6N2E2_3894 0.43 +0.9
4,526,885 - Pf6N2E2_3894 0.43 -0.1
4,526,986 + Pf6N2E2_3894 0.51 -0.7
4,526,986 + Pf6N2E2_3894 0.51 -0.0
4,526,986 + Pf6N2E2_3894 0.51 +0.6
4,526,986 + Pf6N2E2_3894 0.51 +1.8
4,526,986 + Pf6N2E2_3894 0.51 +0.1
4,526,987 - Pf6N2E2_3894 0.51 +0.1
4,526,987 - Pf6N2E2_3894 0.51 -0.9
4,526,987 - Pf6N2E2_3894 0.51 -0.6
4,526,987 - Pf6N2E2_3894 0.51 +1.4
4,526,987 - Pf6N2E2_3894 0.51 +0.3
4,526,987 - Pf6N2E2_3894 0.51 +0.3
4,526,987 - Pf6N2E2_3894 0.51 +0.7
4,527,343 + Pf6N2E2_3894 0.80 +0.7
4,527,424 + Pf6N2E2_3894 0.87 -0.2
4,527,424 + Pf6N2E2_3894 0.87 -0.1
4,527,424 + Pf6N2E2_3894 0.87 -0.0
4,527,424 + Pf6N2E2_3894 0.87 +0.7
4,527,424 + Pf6N2E2_3894 0.87 +0.9
4,527,424 + Pf6N2E2_3894 0.87 -0.7
4,527,424 + Pf6N2E2_3894 0.87 +0.3
4,527,425 - Pf6N2E2_3894 0.87 +1.3
4,527,425 - Pf6N2E2_3894 0.87 -0.4
4,527,425 - Pf6N2E2_3894 0.87 -0.8
4,527,425 - Pf6N2E2_3894 0.87 +0.6
4,527,425 - Pf6N2E2_3894 0.87 +1.2
4,527,657 - -0.5
4,527,739 - +0.5
4,527,756 + +0.1
4,527,757 - -2.4
4,527,757 - +0.2
4,528,008 + Pf6N2E2_3895 0.16 -2.4
4,528,009 - Pf6N2E2_3895 0.16 +0.6
4,528,104 + Pf6N2E2_3895 0.21 +0.1
4,528,104 + Pf6N2E2_3895 0.21 +1.0
4,528,104 + Pf6N2E2_3895 0.21 +0.4
4,528,104 + Pf6N2E2_3895 0.21 +0.5
4,528,104 + Pf6N2E2_3895 0.21 +0.3
4,528,105 - Pf6N2E2_3895 0.21 +0.0
4,528,105 - Pf6N2E2_3895 0.21 +0.2
4,528,105 - Pf6N2E2_3895 0.21 +1.5
4,528,105 - Pf6N2E2_3895 0.21 +0.8
4,528,105 - Pf6N2E2_3895 0.21 +0.6
4,528,105 - Pf6N2E2_3895 0.21 +0.7
4,528,105 - Pf6N2E2_3895 0.21 +0.8
4,528,135 + Pf6N2E2_3895 0.23 +1.3
4,528,161 + Pf6N2E2_3895 0.24 +0.9
4,528,161 + Pf6N2E2_3895 0.24 +0.9
4,528,161 + Pf6N2E2_3895 0.24 +1.3
4,528,161 + Pf6N2E2_3895 0.24 +0.9
4,528,162 - Pf6N2E2_3895 0.24 +0.4
4,528,162 - Pf6N2E2_3895 0.24 +0.8
4,528,215 + Pf6N2E2_3895 0.27 -0.7
4,528,215 + Pf6N2E2_3895 0.27 +0.9
4,528,215 + Pf6N2E2_3895 0.27 -0.2
4,528,216 - Pf6N2E2_3895 0.27 +0.0
4,528,216 - Pf6N2E2_3895 0.27 +0.7
4,528,216 - Pf6N2E2_3895 0.27 -1.3
4,528,216 - Pf6N2E2_3895 0.27 +0.1
4,528,254 + Pf6N2E2_3895 0.29 -0.9
4,528,263 + Pf6N2E2_3895 0.29 -0.2
4,528,263 + Pf6N2E2_3895 0.29 -0.4
4,528,264 - Pf6N2E2_3895 0.29 -0.9
4,528,410 + Pf6N2E2_3895 0.37 +1.1
4,528,410 + Pf6N2E2_3895 0.37 +0.1
4,528,410 + Pf6N2E2_3895 0.37 +0.2
4,528,411 - Pf6N2E2_3895 0.37 -0.6
4,528,416 + Pf6N2E2_3895 0.37 -2.5

Or see this region's nucleotide sequence