Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04880

Experiment: Mc formate, casamino free, with 10mM L-Ornithine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04870 and MMP_RS04875 are separated by 22 nucleotidesMMP_RS04875 and MMP_RS04880 are separated by 64 nucleotidesMMP_RS04880 and MMP_RS04885 are separated by 57 nucleotidesMMP_RS04885 and MMP_RS04890 are separated by 13 nucleotides MMP_RS04870: MMP_RS04870 - TIGR02253 family HAD-type hydrolase, at 926,379 to 927,056 _RS04870 MMP_RS04875: MMP_RS04875 - energy-converting hydrogenase B subunit P, at 927,079 to 927,366 _RS04875 MMP_RS04880: MMP_RS04880 - phosphoadenosine phosphosulfate reductase family protein, at 927,431 to 928,942 _RS04880 MMP_RS04885: MMP_RS04885 - sulfite exporter TauE/SafE family protein, at 929,000 to 929,812 _RS04885 MMP_RS04890: MMP_RS04890 - adenylyltransferase/cytidyltransferase family protein, at 929,826 to 930,278 _RS04890 Position (kb) 927 928 929Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 926.431 kb on - strandat 926.432 kb on + strandat 926.440 kb on + strandat 926.440 kb on + strandat 926.440 kb on + strandat 926.517 kb on + strand, within MMP_RS04870at 926.568 kb on + strand, within MMP_RS04870at 926.589 kb on + strand, within MMP_RS04870at 926.620 kb on - strand, within MMP_RS04870at 926.621 kb on + strand, within MMP_RS04870at 926.635 kb on + strand, within MMP_RS04870at 926.636 kb on - strand, within MMP_RS04870at 926.637 kb on + strand, within MMP_RS04870at 926.808 kb on + strand, within MMP_RS04870at 926.912 kb on - strand, within MMP_RS04870at 927.073 kb on - strandat 927.073 kb on - strandat 927.073 kb on - strandat 927.074 kb on + strandat 927.076 kb on + strandat 927.083 kb on + strandat 927.118 kb on + strand, within MMP_RS04875at 927.158 kb on + strand, within MMP_RS04875at 927.294 kb on + strand, within MMP_RS04875at 927.313 kb on - strand, within MMP_RS04875at 927.314 kb on + strand, within MMP_RS04875at 927.317 kb on - strand, within MMP_RS04875at 927.318 kb on + strand, within MMP_RS04875at 927.318 kb on + strand, within MMP_RS04875at 927.352 kb on - strandat 927.353 kb on + strandat 927.367 kb on - strandat 927.367 kb on - strandat 927.368 kb on + strandat 927.368 kb on + strandat 927.368 kb on + strandat 927.369 kb on - strandat 927.369 kb on - strandat 927.369 kb on - strandat 927.370 kb on + strandat 927.370 kb on + strandat 927.370 kb on + strandat 927.386 kb on - strandat 927.392 kb on - strandat 927.393 kb on + strandat 927.397 kb on - strandat 927.398 kb on + strandat 927.398 kb on + strandat 927.398 kb on + strandat 927.411 kb on - strandat 927.411 kb on - strandat 927.411 kb on - strandat 927.412 kb on + strandat 927.412 kb on + strandat 927.412 kb on + strandat 927.412 kb on + strandat 927.412 kb on + strandat 927.412 kb on + strandat 927.413 kb on - strandat 927.413 kb on - strandat 927.413 kb on - strandat 927.414 kb on + strandat 927.414 kb on + strandat 927.414 kb on + strandat 927.414 kb on + strandat 927.425 kb on - strandat 927.606 kb on + strand, within MMP_RS04880at 927.675 kb on + strand, within MMP_RS04880at 927.678 kb on + strand, within MMP_RS04880at 927.695 kb on + strand, within MMP_RS04880at 927.895 kb on - strand, within MMP_RS04880at 927.899 kb on - strand, within MMP_RS04880at 927.996 kb on - strand, within MMP_RS04880at 927.996 kb on - strand, within MMP_RS04880at 928.000 kb on - strand, within MMP_RS04880at 928.001 kb on + strand, within MMP_RS04880at 928.001 kb on + strand, within MMP_RS04880at 928.001 kb on + strand, within MMP_RS04880at 928.001 kb on + strand, within MMP_RS04880at 928.001 kb on + strand, within MMP_RS04880at 928.112 kb on - strand, within MMP_RS04880at 928.448 kb on + strand, within MMP_RS04880at 928.452 kb on + strand, within MMP_RS04880at 928.452 kb on + strand, within MMP_RS04880at 928.452 kb on + strand, within MMP_RS04880at 928.470 kb on + strand, within MMP_RS04880at 928.519 kb on - strand, within MMP_RS04880at 928.678 kb on - strand, within MMP_RS04880at 928.730 kb on + strand, within MMP_RS04880at 928.945 kb on - strandat 928.998 kb on + strandat 929.002 kb on + strandat 929.006 kb on - strandat 929.006 kb on - strandat 929.007 kb on + strandat 929.007 kb on + strandat 929.014 kb on - strandat 929.014 kb on - strandat 929.014 kb on - strandat 929.015 kb on + strandat 929.070 kb on + strandat 929.152 kb on + strand, within MMP_RS04885at 929.169 kb on - strand, within MMP_RS04885at 929.174 kb on + strand, within MMP_RS04885at 929.176 kb on + strand, within MMP_RS04885at 929.209 kb on + strand, within MMP_RS04885at 929.261 kb on - strand, within MMP_RS04885at 929.262 kb on + strand, within MMP_RS04885at 929.315 kb on + strand, within MMP_RS04885at 929.373 kb on + strand, within MMP_RS04885at 929.373 kb on + strand, within MMP_RS04885at 929.414 kb on + strand, within MMP_RS04885at 929.447 kb on - strand, within MMP_RS04885at 929.495 kb on - strand, within MMP_RS04885at 929.500 kb on + strand, within MMP_RS04885at 929.537 kb on + strand, within MMP_RS04885at 929.565 kb on - strand, within MMP_RS04885at 929.565 kb on - strand, within MMP_RS04885at 929.576 kb on - strand, within MMP_RS04885at 929.576 kb on - strand, within MMP_RS04885at 929.602 kb on + strand, within MMP_RS04885at 929.602 kb on + strand, within MMP_RS04885at 929.667 kb on - strand, within MMP_RS04885at 929.668 kb on + strand, within MMP_RS04885at 929.701 kb on + strand, within MMP_RS04885at 929.702 kb on - strand, within MMP_RS04885at 929.790 kb on + strandat 929.794 kb on + strandat 929.813 kb on + strandat 929.817 kb on + strandat 929.817 kb on + strandat 929.817 kb on + strandat 929.844 kb on + strandat 929.859 kb on + strandat 929.909 kb on + strand, within MMP_RS04890at 929.938 kb on + strand, within MMP_RS04890

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Per-strain Table

Position Strand Gene LocusTag Fraction Mc formate, casamino free, with 10mM L-Ornithine
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926,431 - -3.4
926,432 + -3.0
926,440 + -1.5
926,440 + -1.7
926,440 + -2.3
926,517 + MMP_RS04870 0.20 -2.0
926,568 + MMP_RS04870 0.28 -2.9
926,589 + MMP_RS04870 0.31 -2.0
926,620 - MMP_RS04870 0.36 -2.2
926,621 + MMP_RS04870 0.36 -1.7
926,635 + MMP_RS04870 0.38 -3.8
926,636 - MMP_RS04870 0.38 -0.9
926,637 + MMP_RS04870 0.38 -2.2
926,808 + MMP_RS04870 0.63 -2.3
926,912 - MMP_RS04870 0.79 -4.0
927,073 - -1.5
927,073 - -3.3
927,073 - -1.8
927,074 + -1.0
927,076 + -2.6
927,083 + -2.5
927,118 + MMP_RS04875 0.14 -0.9
927,158 + MMP_RS04875 0.27 -2.7
927,294 + MMP_RS04875 0.75 -2.7
927,313 - MMP_RS04875 0.81 -2.4
927,314 + MMP_RS04875 0.82 -1.2
927,317 - MMP_RS04875 0.83 -1.6
927,318 + MMP_RS04875 0.83 -1.8
927,318 + MMP_RS04875 0.83 -2.0
927,352 - -1.3
927,353 + -2.5
927,367 - -3.0
927,367 - -3.0
927,368 + -2.2
927,368 + +0.5
927,368 + -2.5
927,369 - -2.3
927,369 - -1.2
927,369 - -1.1
927,370 + -2.5
927,370 + -1.2
927,370 + -1.6
927,386 - -2.4
927,392 - -1.5
927,393 + -3.0
927,397 - -2.7
927,398 + -0.8
927,398 + -2.1
927,398 + -2.2
927,411 - -0.2
927,411 - -1.1
927,411 - -1.0
927,412 + -0.7
927,412 + -0.7
927,412 + -0.5
927,412 + -2.4
927,412 + -1.5
927,412 + -1.1
927,413 - +0.1
927,413 - -1.5
927,413 - -0.7
927,414 + +1.0
927,414 + -0.5
927,414 + -0.3
927,414 + -0.6
927,425 - -0.4
927,606 + MMP_RS04880 0.12 -3.6
927,675 + MMP_RS04880 0.16 -0.4
927,678 + MMP_RS04880 0.16 -0.3
927,695 + MMP_RS04880 0.17 -1.4
927,895 - MMP_RS04880 0.31 +0.0
927,899 - MMP_RS04880 0.31 -0.7
927,996 - MMP_RS04880 0.37 +0.7
927,996 - MMP_RS04880 0.37 -0.7
928,000 - MMP_RS04880 0.38 -0.1
928,001 + MMP_RS04880 0.38 -0.0
928,001 + MMP_RS04880 0.38 -0.2
928,001 + MMP_RS04880 0.38 +0.0
928,001 + MMP_RS04880 0.38 -0.6
928,001 + MMP_RS04880 0.38 +0.6
928,112 - MMP_RS04880 0.45 -0.4
928,448 + MMP_RS04880 0.67 -0.2
928,452 + MMP_RS04880 0.68 -0.7
928,452 + MMP_RS04880 0.68 +1.0
928,452 + MMP_RS04880 0.68 +0.3
928,470 + MMP_RS04880 0.69 +0.3
928,519 - MMP_RS04880 0.72 -3.1
928,678 - MMP_RS04880 0.82 -0.7
928,730 + MMP_RS04880 0.86 +0.4
928,945 - +0.8
928,998 + +0.2
929,002 + +0.8
929,006 - -0.5
929,006 - -1.3
929,007 + -0.5
929,007 + -1.3
929,014 - -2.6
929,014 - +0.4
929,014 - -4.4
929,015 + -0.1
929,070 + -0.8
929,152 + MMP_RS04885 0.19 +0.7
929,169 - MMP_RS04885 0.21 -0.5
929,174 + MMP_RS04885 0.21 -0.3
929,176 + MMP_RS04885 0.22 +0.1
929,209 + MMP_RS04885 0.26 -0.3
929,261 - MMP_RS04885 0.32 -3.2
929,262 + MMP_RS04885 0.32 -2.8
929,315 + MMP_RS04885 0.39 +0.4
929,373 + MMP_RS04885 0.46 -1.3
929,373 + MMP_RS04885 0.46 +1.2
929,414 + MMP_RS04885 0.51 -0.5
929,447 - MMP_RS04885 0.55 -2.3
929,495 - MMP_RS04885 0.61 -1.0
929,500 + MMP_RS04885 0.62 +0.1
929,537 + MMP_RS04885 0.66 -1.4
929,565 - MMP_RS04885 0.69 +0.3
929,565 - MMP_RS04885 0.69 +0.2
929,576 - MMP_RS04885 0.71 -0.3
929,576 - MMP_RS04885 0.71 +0.1
929,602 + MMP_RS04885 0.74 -3.0
929,602 + MMP_RS04885 0.74 -0.1
929,667 - MMP_RS04885 0.82 -0.5
929,668 + MMP_RS04885 0.82 -1.5
929,701 + MMP_RS04885 0.86 +0.2
929,702 - MMP_RS04885 0.86 +0.6
929,790 + -0.2
929,794 + -0.3
929,813 + +0.2
929,817 + +0.6
929,817 + -0.4
929,817 + +0.4
929,844 + -0.8
929,859 + -1.7
929,909 + MMP_RS04890 0.18 -1.8
929,938 + MMP_RS04890 0.25 -0.8

Or see this region's nucleotide sequence