Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03909
Experiment: PYE with CHIR-090 2 ug/mL
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | PYE with CHIR-090 2 ug/mL |
---|---|---|---|---|---|
remove | |||||
3,636,829 | + | -0.9 | |||
3,636,837 | - | +0.4 | |||
3,636,837 | - | +0.8 | |||
3,636,844 | + | -1.9 | |||
3,636,847 | - | +0.5 | |||
3,636,849 | + | -0.9 | |||
3,636,852 | - | +0.3 | |||
3,636,853 | - | +0.5 | |||
3,636,857 | - | +0.2 | |||
3,636,873 | + | +0.4 | |||
3,636,881 | - | CCNA_03909 | 0.11 | +0.6 | |
3,636,886 | - | CCNA_03909 | 0.12 | +0.1 | |
3,636,941 | - | CCNA_03909 | 0.19 | -0.7 | |
3,636,941 | - | CCNA_03909 | 0.19 | +0.4 | |
3,636,973 | - | CCNA_03909 | 0.24 | -0.2 | |
3,637,104 | + | CCNA_03909 | 0.42 | +2.6 | |
3,637,168 | - | CCNA_03909 | 0.51 | -2.2 | |
3,637,168 | - | CCNA_03909 | 0.51 | -1.7 | |
3,637,168 | - | CCNA_03909 | 0.51 | -2.8 | |
3,637,224 | - | CCNA_03909 | 0.58 | -2.0 | |
3,637,236 | - | CCNA_03909 | 0.60 | +0.4 | |
3,637,322 | - | CCNA_03909 | 0.72 | -1.9 | |
3,637,322 | - | CCNA_03909 | 0.72 | -0.7 | |
3,637,337 | + | CCNA_03909 | 0.74 | -0.9 | |
3,637,361 | + | CCNA_03909 | 0.77 | -0.6 | |
3,637,369 | - | CCNA_03909 | 0.78 | -3.1 | |
3,637,369 | - | CCNA_03909 | 0.78 | -1.3 | |
3,637,584 | - | -0.5 | |||
3,637,604 | - | -2.2 | |||
3,637,634 | - | -0.5 |
Or see this region's nucleotide sequence