Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03025

Experiment: PYE with CHIR-090 2 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with CHIR-090 2 ug/mL
3,179,304	+				-2.0
3,179,352	-				-0.8
3,179,394	-				-0.2
3,179,394	-				+0.5
3,179,394	-				+0.1
3,179,446	-		CCNA_03024	0.16	-0.0
3,179,450	+		CCNA_03024	0.16	-0.5
3,179,455	+		CCNA_03024	0.17	-0.9
3,179,458	-		CCNA_03024	0.17	+0.9
3,179,503	+		CCNA_03024	0.22	-0.0
3,179,511	-		CCNA_03024	0.23	-0.3
3,179,511	-		CCNA_03024	0.23	-0.6
3,179,511	-		CCNA_03024	0.23	+0.4
3,179,517	-		CCNA_03024	0.24	-0.4
3,179,517	-		CCNA_03024	0.24	+0.2
3,179,517	-		CCNA_03024	0.24	-0.2
3,179,528	-		CCNA_03024	0.25	-0.5
3,179,545	-		CCNA_03024	0.27	+0.2
3,179,545	-		CCNA_03024	0.27	+0.4
3,179,571	-				+3.8
3,179,572	-		CCNA_03024	0.30	-0.2
3,179,678	-		CCNA_03024	0.42	-0.2
3,179,695	+		CCNA_03024	0.44	-1.9
3,179,695	+		CCNA_03024	0.44	-0.5
3,179,740	+		CCNA_03024	0.49	-0.4
3,179,748	-		CCNA_03024	0.49	-0.1
3,179,748	-		CCNA_03024	0.49	-0.1
3,179,748	-		CCNA_03024	0.49	-0.9
3,179,748	-		CCNA_03024	0.49	+0.1
3,179,748	-		CCNA_03024	0.49	+0.3
3,179,755	+		CCNA_03024	0.50	-0.0
3,179,780	-		CCNA_03024	0.53	-1.3
3,179,780	-		CCNA_03024	0.53	-0.7
3,179,780	-		CCNA_03024	0.53	-0.3
3,179,780	-		CCNA_03024	0.53	-0.1
3,179,780	-		CCNA_03024	0.53	+0.7
3,179,785	+		CCNA_03024	0.54	-0.7
3,179,785	+		CCNA_03024	0.54	-0.8
3,179,793	-		CCNA_03024	0.55	+0.3
3,179,793	-				-1.1
3,179,793	-		CCNA_03024	0.55	-0.9
3,179,793	-		CCNA_03024	0.55	+0.5
3,179,793	-		CCNA_03024	0.55	-0.4
3,179,793	-		CCNA_03024	0.55	-0.5
3,179,848	+		CCNA_03024	0.61	-2.0
3,179,848	+		CCNA_03024	0.61	+0.2
3,179,856	-		CCNA_03024	0.62	-1.6
3,179,856	-		CCNA_03024	0.62	-1.7
3,179,856	-		CCNA_03024	0.62	+0.3
3,179,856	-		CCNA_03024	0.62	+1.0
3,179,914	-		CCNA_03024	0.68	-0.3
3,179,918	+		CCNA_03024	0.69	-1.2
3,179,918	+		CCNA_03024	0.69	-0.7
3,179,936	-		CCNA_03024	0.71	-0.7
3,179,974	+		CCNA_03024	0.75	-2.0
3,179,974	+		CCNA_03024	0.75	-0.7
3,179,980	-		CCNA_03024	0.76	-0.4
3,179,982	-		CCNA_03024	0.76	-0.7
3,180,070	+		CCNA_03024	0.86	-1.6
3,180,078	-		CCNA_03024	0.87	-1.0
3,180,078	-				-0.4
3,180,078	-		CCNA_03024	0.87	-0.8
3,180,078	-		CCNA_03024	0.87	-1.3
3,180,093	+		CCNA_03024	0.88	+1.2
3,180,105	+		CCNA_03024	0.90	-1.5
3,180,149	+				-0.8
3,180,159	+				-0.6
3,180,184	-				+0.1
3,180,188	+				-1.2
3,180,208	-				-0.7
3,180,227	+				+0.1
3,180,240	+				-1.2
3,180,299	+				-0.3
3,180,314	+				+2.8
3,180,317	-				+0.1
3,180,317	-				-0.7
3,180,348	+		CCNA_03025	0.14	-1.0
3,180,356	-		CCNA_03025	0.15	+1.9
3,180,374	+		CCNA_03025	0.19	-0.4
3,180,401	+		CCNA_03025	0.24	-1.5
3,180,401	+		CCNA_03025	0.24	-0.8
3,180,401	+		CCNA_03025	0.24	-2.0
3,180,401	+		CCNA_03025	0.24	-1.5
3,180,409	-		CCNA_03025	0.26	-0.4
3,180,409	-		CCNA_03025	0.26	-2.6
3,180,409	-		CCNA_03025	0.26	-2.2
3,180,409	-		CCNA_03025	0.26	+0.4
3,180,409	-		CCNA_03025	0.26	-1.2
3,180,411	-		CCNA_03025	0.26	-0.7
3,180,411	-		CCNA_03025	0.26	-0.6
3,180,417	+		CCNA_03025	0.27	-0.7
3,180,424	-		CCNA_03025	0.29	-1.9
3,180,424	-		CCNA_03025	0.29	+0.8
3,180,528	+		CCNA_03025	0.49	-0.9
3,180,570	-		CCNA_03025	0.58	-1.5
3,180,582	+		CCNA_03025	0.60	-0.8
3,180,582	+		CCNA_03025	0.60	-0.6
3,180,616	-		CCNA_03025	0.67	+2.8
3,180,616	-		CCNA_03025	0.67	-1.9
3,180,678	-		CCNA_03025	0.79	-0.7
3,180,684	-		CCNA_03025	0.80	-1.8
3,180,752	+				+0.0
3,180,752	+				-1.6
3,180,785	+				+0.4
3,180,793	-				-2.4
3,180,793	-				-1.9
3,180,793	-				-4.2
3,180,793	-				-2.6
3,180,793	-				-0.4
3,180,848	-				-1.3
3,180,967	-		CCNA_03026	0.26	-0.4
3,181,082	-		CCNA_03026	0.43	-2.8
3,181,086	+		CCNA_03026	0.43	-0.8
3,181,092	-		CCNA_03026	0.44	-0.4
3,181,094	-		CCNA_03026	0.45	-3.7
3,181,164	-		CCNA_03026	0.55	-0.4
3,181,195	-		CCNA_03026	0.59	-2.6
3,181,196	+		CCNA_03026	0.59	-3.8
3,181,202	+		CCNA_03026	0.60	-2.0
3,181,203	-		CCNA_03026	0.60	-2.6
3,181,203	-		CCNA_03026	0.60	-2.0
3,181,210	-		CCNA_03026	0.61	-0.1
3,181,218	+		CCNA_03026	0.62	-3.0
3,181,231	-		CCNA_03026	0.64	-1.4
3,181,245	-		CCNA_03026	0.66	-1.0
3,181,274	+		CCNA_03026	0.70	-1.9
3,181,320	-		CCNA_03026	0.77	-1.2
3,181,349	-		CCNA_03026	0.81	-1.0
3,181,388	+		CCNA_03026	0.86	-2.5
3,181,391	+		CCNA_03026	0.87	+0.2
3,181,444	-				-3.3
3,181,452	+				-1.9
3,181,460	-				-1.8
3,181,498	+				+0.4
3,181,506	-				+1.7
3,181,529	-				+0.2
3,181,544	+				-0.0
3,181,550	-				-0.3
3,181,592	+				-0.6
3,181,600	-				-1.2
3,181,635	+				-0.1
3,181,643	-				-1.0
3,181,648	+				-1.3
3,181,648	+				-2.4
3,181,648	+				-0.1
3,181,651	-				-0.3
3,181,667	-				-0.8
3,181,675	+				-1.5
3,181,675	+				-0.0
3,181,756	+				-2.5
3,181,756	+				-2.2
3,181,764	-				-3.0
3,181,770	-				-0.8
3,181,781	+		CCNA_03027	0.10	-1.8
3,181,781	+		CCNA_03027	0.10	+0.7
3,181,781	+		CCNA_03027	0.10	-1.3
3,181,783	+		CCNA_03027	0.10	-2.4