Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01396

Experiment: PYE with CHIR-090 2 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with CHIR-090 2 ug/mL
1,515,163	+				+0.5
1,515,163	+				-1.3
1,515,171	-				+0.8
1,515,204	-				+0.3
1,515,233	+				-0.8
1,515,289	+				+1.0
1,515,297	-				+0.1
1,515,385	+		CCNA_01396	0.11	-0.9
1,515,408	+		CCNA_01396	0.13	-1.7
1,515,444	+		CCNA_01396	0.15	-1.8
1,515,459	-		CCNA_01396	0.16	-2.2
1,515,461	+		CCNA_01396	0.16	-1.1
1,515,502	+		CCNA_01396	0.18	-1.2
1,515,508	+		CCNA_01396	0.18	+1.4
1,515,508	+		CCNA_01396	0.18	+0.7
1,515,515	-		CCNA_01396	0.19	+0.4
1,515,516	-		CCNA_01396	0.19	-1.1
1,515,516	-		CCNA_01396	0.19	-1.0
1,515,533	+		CCNA_01396	0.20	-0.9
1,515,533	+		CCNA_01396	0.20	-1.8
1,515,533	+		CCNA_01396	0.20	-1.7
1,515,541	-		CCNA_01396	0.20	+1.0
1,515,541	-		CCNA_01396	0.20	-1.3
1,515,562	-		CCNA_01396	0.22	+0.2
1,515,571	+		CCNA_01396	0.22	-0.6
1,515,571	+		CCNA_01396	0.22	-1.2
1,515,571	+		CCNA_01396	0.22	-1.8
1,515,571	+		CCNA_01396	0.22	-0.6
1,515,571	+		CCNA_01396	0.22	-0.2
1,515,579	-		CCNA_01396	0.23	-0.1
1,515,579	-		CCNA_01396	0.23	-0.5
1,515,579	-		CCNA_01396	0.23	-1.4
1,515,579	-		CCNA_01396	0.23	-0.7
1,515,590	+		CCNA_01396	0.23	-1.1
1,515,592	+		CCNA_01396	0.23	-0.8
1,515,597	+		CCNA_01396	0.24	+0.2
1,515,600	-		CCNA_01396	0.24	+0.7
1,515,600	-		CCNA_01396	0.24	+0.0
1,515,605	-		CCNA_01396	0.24	-0.8
1,515,638	-		CCNA_01396	0.26	-1.7
1,515,640	+		CCNA_01396	0.26	+0.5
1,515,643	-		CCNA_01396	0.26	-0.7
1,515,654	-		CCNA_01396	0.27	-2.2
1,515,688	+		CCNA_01396	0.29	-1.4
1,515,709	+		CCNA_01396	0.30	+0.0
1,515,724	+		CCNA_01396	0.31	-1.3
1,515,781	+		CCNA_01396	0.34	+0.0
1,515,789	-		CCNA_01396	0.35	-1.2
1,515,790	-		CCNA_01396	0.35	-1.1
1,515,800	+		CCNA_01396	0.35	+0.0
1,515,805	+		CCNA_01396	0.36	+0.3
1,515,807	+		CCNA_01396	0.36	-0.1
1,515,808	-		CCNA_01396	0.36	-1.8
1,515,871	+		CCNA_01396	0.39	-0.7
1,515,879	-		CCNA_01396	0.40	-0.5
1,515,895	+		CCNA_01396	0.41	-0.7
1,515,903	-		CCNA_01396	0.41	-1.7
1,515,903	-		CCNA_01396	0.41	+1.7
1,515,903	-		CCNA_01396	0.41	+1.4
1,515,908	-		CCNA_01396	0.42	-0.0
1,515,932	+		CCNA_01396	0.43	-0.6
1,515,935	-		CCNA_01396	0.43	-0.6
1,515,935	-		CCNA_01396	0.43	-1.8
1,515,935	-		CCNA_01396	0.43	-1.2
1,515,940	-		CCNA_01396	0.43	-1.3
1,515,990	+		CCNA_01396	0.46	+2.1
1,516,020	-		CCNA_01396	0.48	-0.9
1,516,074	+		CCNA_01396	0.51	-0.3
1,516,121	+		CCNA_01396	0.54	-1.1
1,516,136	+		CCNA_01396	0.55	-0.9
1,516,152	+		CCNA_01396	0.56	-1.5
1,516,205	+		CCNA_01396	0.59	-0.6
1,516,205	+		CCNA_01396	0.59	-1.2
1,516,212	-		CCNA_01396	0.59	-0.1
1,516,217	+		CCNA_01396	0.59	-1.9
1,516,222	+		CCNA_01396	0.60	-1.7
1,516,222	+		CCNA_01396	0.60	-1.3
1,516,222	+		CCNA_01396	0.60	-1.2
1,516,230	-		CCNA_01396	0.60	+1.7
1,516,230	-		CCNA_01396	0.60	-1.8
1,516,245	-		CCNA_01396	0.61	-0.7
1,516,260	+		CCNA_01396	0.62	-1.2
1,516,274	+		CCNA_01396	0.63	-0.9
1,516,274	+		CCNA_01396	0.63	-0.1
1,516,289	+		CCNA_01396	0.64	+0.5
1,516,291	+		CCNA_01396	0.64	-0.9
1,516,291	+		CCNA_01396	0.64	-2.5
1,516,299	-		CCNA_01396	0.64	+2.0
1,516,322	+		CCNA_01396	0.66	-1.0
1,516,340	-		CCNA_01396	0.67	-1.4
1,516,376	-		CCNA_01396	0.69	-0.9
1,516,379	+		CCNA_01396	0.69	-0.9
1,516,406	+		CCNA_01396	0.70	-0.6
1,516,437	-		CCNA_01396	0.72	+0.4
1,516,438	-		CCNA_01396	0.72	-2.1
1,516,438	-		CCNA_01396	0.72	-0.6
1,516,438	-		CCNA_01396	0.72	-0.2
1,516,449	+		CCNA_01396	0.73	-0.5
1,516,449	+		CCNA_01396	0.73	-2.6
1,516,453	+		CCNA_01396	0.73	+0.8
1,516,457	-		CCNA_01396	0.73	-0.9
1,516,529	+		CCNA_01396	0.77	-1.8
1,516,560	+		CCNA_01396	0.79	-1.5
1,516,576	+		CCNA_01396	0.80	-3.0
1,516,583	+		CCNA_01396	0.81	+0.6
1,516,584	-		CCNA_01396	0.81	-0.3
1,516,655	+		CCNA_01396	0.85	-0.3
1,516,675	+		CCNA_01396	0.86	-1.5
1,516,677	+		CCNA_01396	0.86	-1.0
1,516,683	-		CCNA_01396	0.86	-2.3
1,516,713	+		CCNA_01396	0.88	-1.2
1,516,770	-				-0.3
1,516,781	+				-1.8
1,516,811	-				+0.1
1,516,815	+				-0.7
1,516,823	-				+1.1
1,516,823	-				+0.4
1,516,823	-				+1.7
1,516,823	-				-2.4
1,516,823	-				+0.0
1,516,823	-				+0.0
1,516,834	+				-0.1
1,516,846	+				-1.2
1,516,869	+				-0.7
1,516,869	+				-1.1
1,516,869	+				-0.6
1,516,869	+				-0.9
1,516,876	-				-1.2
1,516,912	+				-0.7
1,516,915	-				-1.1
1,516,934	-				+0.1
1,516,936	+				-0.3
1,517,902	-				+0.0
1,517,902	-				-0.8
1,517,913	+		CCNA_01398	0.11	-0.4