Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00735

Experiment: PYE with CHIR-090 2 ug/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00734 and CCNA_00735 are separated by 61 nucleotidesCCNA_00735 and CCNA_00736 are separated by 112 nucleotidesCCNA_00736 and CCNA_00737 are separated by 146 nucleotides CCNA_00734: CCNA_00734 - GumN superfamily protein, at 791,491 to 792,399 _00734 CCNA_00735: CCNA_00735 - beta-barrel assembly machine (BAM) protein BamF, at 792,461 to 793,030 _00735 CCNA_00736: CCNA_00736 - lipoprotein signal peptidase, at 793,143 to 793,649 _00736 CCNA_00737: CCNA_00737 - isoleucyl-tRNA synthetase, at 793,796 to 796,705 _00737 Position (kb) 792 793 794Strain fitness (log2 ratio) -3 -2 -1 0 1at 791.481 kb on - strandat 791.490 kb on + strandat 791.490 kb on + strandat 791.500 kb on + strandat 791.500 kb on + strandat 791.508 kb on - strandat 791.510 kb on + strandat 791.515 kb on + strandat 791.520 kb on + strandat 791.608 kb on - strand, within CCNA_00734at 791.643 kb on + strand, within CCNA_00734at 791.643 kb on + strand, within CCNA_00734at 791.643 kb on + strand, within CCNA_00734at 791.723 kb on - strand, within CCNA_00734at 791.723 kb on - strand, within CCNA_00734at 791.723 kb on - strand, within CCNA_00734at 791.741 kb on - strand, within CCNA_00734at 791.748 kb on + strand, within CCNA_00734at 791.757 kb on + strand, within CCNA_00734at 791.765 kb on - strand, within CCNA_00734at 791.811 kb on + strand, within CCNA_00734at 791.848 kb on + strand, within CCNA_00734at 791.856 kb on - strand, within CCNA_00734at 791.923 kb on + strand, within CCNA_00734at 791.923 kb on + strand, within CCNA_00734at 791.923 kb on + strand, within CCNA_00734at 791.923 kb on + strand, within CCNA_00734at 791.923 kb on + strand, within CCNA_00734at 791.923 kb on + strand, within CCNA_00734at 791.931 kb on - strand, within CCNA_00734at 791.931 kb on - strand, within CCNA_00734at 791.940 kb on + strand, within CCNA_00734at 791.993 kb on + strand, within CCNA_00734at 791.995 kb on + strand, within CCNA_00734at 792.003 kb on - strand, within CCNA_00734at 792.003 kb on - strand, within CCNA_00734at 792.072 kb on - strand, within CCNA_00734at 792.104 kb on + strand, within CCNA_00734at 792.112 kb on - strand, within CCNA_00734at 792.148 kb on + strand, within CCNA_00734at 792.187 kb on - strand, within CCNA_00734at 792.246 kb on + strand, within CCNA_00734at 792.246 kb on + strand, within CCNA_00734at 792.260 kb on - strand, within CCNA_00734at 792.273 kb on - strand, within CCNA_00734at 792.301 kb on + strand, within CCNA_00734at 792.302 kb on + strand, within CCNA_00734at 792.305 kb on - strand, within CCNA_00734at 792.376 kb on + strandat 792.410 kb on + strandat 792.410 kb on + strandat 792.418 kb on - strandat 792.425 kb on + strandat 792.425 kb on + strandat 792.433 kb on - strandat 792.433 kb on - strandat 792.433 kb on - strandat 792.433 kb on - strandat 792.508 kb on - strandat 792.555 kb on - strand, within CCNA_00735at 792.620 kb on - strand, within CCNA_00735at 793.036 kb on - strandat 793.047 kb on + strandat 793.105 kb on + strandat 793.113 kb on - strandat 793.113 kb on - strandat 793.638 kb on - strandat 793.656 kb on - strandat 793.705 kb on + strandat 793.710 kb on + strandat 793.710 kb on + strandat 793.713 kb on - strandat 793.713 kb on - strandat 793.730 kb on - strandat 793.735 kb on + strandat 793.735 kb on + strandat 793.749 kb on - strandat 793.786 kb on + strandat 793.805 kb on + strandat 793.810 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 2 ug/mL
remove
791,481 - +0.8
791,490 + +0.2
791,490 + -0.0
791,500 + +0.3
791,500 + +0.4
791,508 - -2.7
791,510 + -1.8
791,515 + +0.4
791,520 + -1.2
791,608 - CCNA_00734 0.13 +0.2
791,643 + CCNA_00734 0.17 +0.3
791,643 + CCNA_00734 0.17 +1.1
791,643 + CCNA_00734 0.17 -0.9
791,723 - CCNA_00734 0.26 -0.4
791,723 - CCNA_00734 0.26 -0.0
791,723 - CCNA_00734 0.26 -0.1
791,741 - CCNA_00734 0.28 -0.6
791,748 + CCNA_00734 0.28 +0.7
791,757 + CCNA_00734 0.29 -0.1
791,765 - CCNA_00734 0.30 +0.7
791,811 + CCNA_00734 0.35 +0.4
791,848 + CCNA_00734 0.39 +0.4
791,856 - CCNA_00734 0.40 +0.5
791,923 + CCNA_00734 0.48 -0.3
791,923 + CCNA_00734 0.48 +0.2
791,923 + CCNA_00734 0.48 +0.3
791,923 + CCNA_00734 0.48 +0.1
791,923 + CCNA_00734 0.48 -0.2
791,923 + CCNA_00734 0.48 +0.8
791,931 - CCNA_00734 0.48 -0.4
791,931 - CCNA_00734 0.48 +1.2
791,940 + CCNA_00734 0.49 +0.8
791,993 + CCNA_00734 0.55 +0.4
791,995 + CCNA_00734 0.55 +0.0
792,003 - CCNA_00734 0.56 +0.8
792,003 - CCNA_00734 0.56 -0.2
792,072 - CCNA_00734 0.64 +0.5
792,104 + CCNA_00734 0.67 -0.0
792,112 - CCNA_00734 0.68 -0.7
792,148 + CCNA_00734 0.72 +0.0
792,187 - CCNA_00734 0.77 +0.0
792,246 + CCNA_00734 0.83 -0.1
792,246 + CCNA_00734 0.83 -0.8
792,260 - CCNA_00734 0.85 +0.2
792,273 - CCNA_00734 0.86 +0.4
792,301 + CCNA_00734 0.89 -0.3
792,302 + CCNA_00734 0.89 -0.0
792,305 - CCNA_00734 0.90 +0.4
792,376 + +0.4
792,410 + -1.0
792,410 + +0.4
792,418 - +0.1
792,425 + +0.0
792,425 + -0.5
792,433 - +0.8
792,433 - +0.3
792,433 - +0.7
792,433 - +0.3
792,508 - +1.4
792,555 - CCNA_00735 0.16 -1.3
792,620 - CCNA_00735 0.28 +0.4
793,036 - -1.1
793,047 + -3.0
793,105 + +0.8
793,113 - -0.2
793,113 - +1.0
793,638 - -0.4
793,656 - +0.5
793,705 + +0.9
793,710 + +0.1
793,710 + -1.7
793,713 - +0.8
793,713 - +0.6
793,730 - +0.5
793,735 + -0.3
793,735 + -0.3
793,749 - +0.2
793,786 + -0.6
793,805 + -0.8
793,810 + -0.4

Or see this region's nucleotide sequence