Experiment: PYE with CHIR-090 2 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00559 and CCNA_00560 are separated by 77 nucleotides CCNA_00560 and CCNA_00561 overlap by 4 nucleotides CCNA_00561 and CCNA_00562 overlap by 4 nucleotides
CCNA_00559: CCNA_00559 - homoserine O-acetyltransferase, at 574,589 to 575,737
_00559
CCNA_00560: CCNA_00560 - phosphohistidine phosphatase SixA, at 575,815 to 576,327
_00560
CCNA_00561: CCNA_00561 - conserved hypothetical cytosolic protein, at 576,324 to 576,668
_00561
CCNA_00562: CCNA_00562 - dihydroorotate dehydrogenase, at 576,665 to 577,723
_00562
Position (kb)
575
576
577 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 574.815 kb on - strand, within CCNA_00559 at 574.818 kb on + strand, within CCNA_00559 at 574.820 kb on + strand, within CCNA_00559 at 574.828 kb on - strand, within CCNA_00559 at 574.832 kb on + strand, within CCNA_00559 at 574.892 kb on - strand, within CCNA_00559 at 574.913 kb on + strand, within CCNA_00559 at 574.925 kb on + strand, within CCNA_00559 at 574.933 kb on - strand, within CCNA_00559 at 574.956 kb on + strand, within CCNA_00559 at 574.976 kb on + strand, within CCNA_00559 at 574.977 kb on + strand, within CCNA_00559 at 574.977 kb on + strand, within CCNA_00559 at 575.051 kb on - strand, within CCNA_00559 at 575.080 kb on - strand, within CCNA_00559 at 575.150 kb on + strand, within CCNA_00559 at 575.174 kb on + strand, within CCNA_00559 at 575.174 kb on + strand, within CCNA_00559 at 575.174 kb on + strand, within CCNA_00559 at 575.174 kb on + strand, within CCNA_00559 at 575.174 kb on + strand at 575.174 kb on + strand, within CCNA_00559 at 575.174 kb on + strand, within CCNA_00559 at 575.174 kb on + strand, within CCNA_00559 at 575.182 kb on - strand, within CCNA_00559 at 575.182 kb on - strand, within CCNA_00559 at 575.182 kb on - strand, within CCNA_00559 at 575.182 kb on - strand, within CCNA_00559 at 575.182 kb on - strand, within CCNA_00559 at 575.182 kb on - strand, within CCNA_00559 at 575.182 kb on - strand, within CCNA_00559 at 575.182 kb on - strand, within CCNA_00559 at 575.196 kb on + strand, within CCNA_00559 at 575.217 kb on - strand, within CCNA_00559 at 575.222 kb on - strand, within CCNA_00559 at 575.222 kb on - strand, within CCNA_00559 at 575.222 kb on - strand, within CCNA_00559 at 575.235 kb on - strand, within CCNA_00559 at 575.240 kb on - strand, within CCNA_00559 at 575.244 kb on + strand, within CCNA_00559 at 575.245 kb on - strand, within CCNA_00559 at 575.249 kb on + strand, within CCNA_00559 at 575.250 kb on + strand, within CCNA_00559 at 575.265 kb on - strand, within CCNA_00559 at 575.305 kb on - strand, within CCNA_00559 at 575.313 kb on + strand, within CCNA_00559 at 575.328 kb on + strand, within CCNA_00559 at 575.336 kb on - strand, within CCNA_00559 at 575.354 kb on + strand, within CCNA_00559 at 575.354 kb on + strand, within CCNA_00559 at 575.362 kb on - strand, within CCNA_00559 at 575.374 kb on + strand, within CCNA_00559 at 575.382 kb on - strand, within CCNA_00559 at 575.382 kb on - strand, within CCNA_00559 at 575.384 kb on - strand, within CCNA_00559 at 575.389 kb on - strand, within CCNA_00559 at 575.410 kb on - strand, within CCNA_00559 at 575.410 kb on - strand, within CCNA_00559 at 575.410 kb on - strand, within CCNA_00559 at 575.451 kb on - strand, within CCNA_00559 at 575.499 kb on - strand, within CCNA_00559 at 575.526 kb on + strand, within CCNA_00559 at 575.546 kb on - strand, within CCNA_00559 at 575.552 kb on - strand, within CCNA_00559 at 575.561 kb on + strand, within CCNA_00559 at 575.579 kb on - strand, within CCNA_00559 at 575.584 kb on - strand, within CCNA_00559 at 575.586 kb on + strand, within CCNA_00559 at 575.586 kb on + strand, within CCNA_00559 at 575.586 kb on + strand, within CCNA_00559 at 575.586 kb on + strand, within CCNA_00559 at 575.586 kb on + strand, within CCNA_00559 at 575.586 kb on + strand, within CCNA_00559 at 575.586 kb on + strand, within CCNA_00559 at 575.586 kb on + strand, within CCNA_00559 at 575.586 kb on + strand, within CCNA_00559 at 575.586 kb on + strand, within CCNA_00559 at 575.594 kb on - strand, within CCNA_00559 at 575.594 kb on - strand, within CCNA_00559 at 575.594 kb on - strand, within CCNA_00559 at 575.594 kb on - strand, within CCNA_00559 at 575.594 kb on - strand, within CCNA_00559 at 575.594 kb on - strand, within CCNA_00559 at 575.594 kb on - strand, within CCNA_00559 at 575.594 kb on - strand, within CCNA_00559 at 575.594 kb on - strand, within CCNA_00559 at 575.618 kb on + strand, within CCNA_00559 at 575.621 kb on - strand, within CCNA_00559 at 575.625 kb on - strand at 575.641 kb on - strand at 575.652 kb on + strand at 575.660 kb on - strand at 575.660 kb on - strand at 575.674 kb on - strand at 575.739 kb on - strand at 575.741 kb on - strand at 575.749 kb on - strand at 575.797 kb on - strand at 575.799 kb on + strand at 575.801 kb on + strand at 575.801 kb on + strand at 575.801 kb on + strand at 575.801 kb on + strand at 575.801 kb on + strand at 575.801 kb on + strand at 575.807 kb on - strand at 575.807 kb on - strand at 575.809 kb on - strand at 575.818 kb on + strand at 575.835 kb on - strand at 575.841 kb on + strand at 575.847 kb on + strand at 575.847 kb on + strand at 575.860 kb on + strand at 575.860 kb on + strand at 575.868 kb on - strand, within CCNA_00560 at 575.868 kb on - strand, within CCNA_00560 at 575.898 kb on + strand, within CCNA_00560 at 575.900 kb on - strand, within CCNA_00560 at 576.001 kb on + strand, within CCNA_00560 at 576.027 kb on - strand, within CCNA_00560 at 576.031 kb on - strand, within CCNA_00560 at 576.048 kb on + strand, within CCNA_00560 at 576.057 kb on + strand, within CCNA_00560 at 576.057 kb on + strand, within CCNA_00560 at 576.057 kb on + strand, within CCNA_00560 at 576.057 kb on + strand, within CCNA_00560 at 576.065 kb on - strand, within CCNA_00560 at 576.175 kb on + strand, within CCNA_00560 at 576.175 kb on + strand, within CCNA_00560 at 576.188 kb on - strand, within CCNA_00560 at 576.191 kb on + strand, within CCNA_00560 at 576.244 kb on + strand, within CCNA_00560 at 576.263 kb on - strand, within CCNA_00560 at 576.270 kb on - strand, within CCNA_00560 at 576.288 kb on + strand at 576.288 kb on + strand at 576.340 kb on - strand at 576.342 kb on + strand at 576.342 kb on + strand at 576.342 kb on + strand at 576.342 kb on + strand at 576.350 kb on - strand at 576.350 kb on - strand at 576.357 kb on + strand at 576.357 kb on + strand at 576.375 kb on + strand, within CCNA_00561 at 576.375 kb on + strand, within CCNA_00561 at 576.383 kb on - strand, within CCNA_00561 at 576.383 kb on - strand, within CCNA_00561 at 576.383 kb on - strand, within CCNA_00561 at 576.383 kb on - strand, within CCNA_00561 at 576.431 kb on - strand, within CCNA_00561 at 576.455 kb on - strand, within CCNA_00561 at 576.455 kb on - strand, within CCNA_00561 at 576.470 kb on + strand, within CCNA_00561 at 576.478 kb on - strand, within CCNA_00561 at 576.528 kb on + strand, within CCNA_00561 at 576.536 kb on - strand, within CCNA_00561 at 576.536 kb on - strand at 576.536 kb on - strand, within CCNA_00561 at 576.580 kb on - strand, within CCNA_00561 at 576.600 kb on - strand, within CCNA_00561 at 576.615 kb on + strand, within CCNA_00561 at 576.669 kb on + strand at 576.695 kb on + strand at 576.695 kb on + strand at 576.703 kb on - strand at 576.703 kb on - strand at 576.703 kb on - strand at 576.727 kb on - strand at 576.742 kb on + strand at 576.747 kb on + strand at 576.750 kb on - strand at 576.761 kb on - strand at 576.761 kb on - strand at 576.761 kb on - strand at 576.783 kb on + strand, within CCNA_00562 at 576.810 kb on + strand, within CCNA_00562 at 576.818 kb on - strand, within CCNA_00562 at 576.841 kb on - strand, within CCNA_00562 at 576.890 kb on + strand, within CCNA_00562 at 576.905 kb on - strand, within CCNA_00562 at 576.915 kb on + strand, within CCNA_00562 at 576.983 kb on + strand, within CCNA_00562 at 576.998 kb on + strand, within CCNA_00562 at 577.006 kb on - strand, within CCNA_00562 at 577.006 kb on - strand, within CCNA_00562 at 577.054 kb on - strand, within CCNA_00562 at 577.072 kb on - strand, within CCNA_00562 at 577.087 kb on - strand, within CCNA_00562 at 577.097 kb on - strand, within CCNA_00562 at 577.148 kb on + strand, within CCNA_00562 at 577.188 kb on + strand, within CCNA_00562 at 577.188 kb on + strand, within CCNA_00562 at 577.196 kb on - strand, within CCNA_00562 at 577.196 kb on - strand, within CCNA_00562 at 577.205 kb on + strand, within CCNA_00562 at 577.210 kb on + strand, within CCNA_00562 at 577.210 kb on + strand, within CCNA_00562 at 577.210 kb on + strand, within CCNA_00562 at 577.210 kb on + strand, within CCNA_00562 at 577.210 kb on + strand, within CCNA_00562 at 577.210 kb on + strand, within CCNA_00562 at 577.218 kb on - strand, within CCNA_00562 at 577.218 kb on - strand, within CCNA_00562 at 577.262 kb on + strand, within CCNA_00562 at 577.270 kb on - strand, within CCNA_00562 at 577.272 kb on - strand, within CCNA_00562 at 577.311 kb on + strand, within CCNA_00562 at 577.319 kb on - strand, within CCNA_00562
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 2 ug/mL remove 574,815 - CCNA_00559 0.20 +0.3 574,818 + CCNA_00559 0.20 +0.5 574,820 + CCNA_00559 0.20 +0.1 574,828 - CCNA_00559 0.21 +0.2 574,832 + CCNA_00559 0.21 +0.9 574,892 - CCNA_00559 0.26 -0.6 574,913 + CCNA_00559 0.28 -0.3 574,925 + CCNA_00559 0.29 -0.5 574,933 - CCNA_00559 0.30 +0.9 574,956 + CCNA_00559 0.32 -0.2 574,976 + CCNA_00559 0.34 -1.4 574,977 + CCNA_00559 0.34 -1.2 574,977 + CCNA_00559 0.34 +1.7 575,051 - CCNA_00559 0.40 +0.0 575,080 - CCNA_00559 0.43 -0.1 575,150 + CCNA_00559 0.49 -1.6 575,174 + CCNA_00559 0.51 -2.8 575,174 + CCNA_00559 0.51 -1.3 575,174 + CCNA_00559 0.51 -0.8 575,174 + CCNA_00559 0.51 -1.4 575,174 + +1.7 575,174 + CCNA_00559 0.51 -0.8 575,174 + CCNA_00559 0.51 -0.9 575,174 + CCNA_00559 0.51 -1.5 575,182 - CCNA_00559 0.52 +0.3 575,182 - CCNA_00559 0.52 +0.1 575,182 - CCNA_00559 0.52 -0.1 575,182 - CCNA_00559 0.52 +0.6 575,182 - CCNA_00559 0.52 +0.4 575,182 - CCNA_00559 0.52 -0.5 575,182 - CCNA_00559 0.52 +0.4 575,182 - CCNA_00559 0.52 +0.5 575,196 + CCNA_00559 0.53 -0.1 575,217 - CCNA_00559 0.55 +0.8 575,222 - CCNA_00559 0.55 -0.7 575,222 - CCNA_00559 0.55 +1.8 575,222 - CCNA_00559 0.55 +0.4 575,235 - CCNA_00559 0.56 +0.6 575,240 - CCNA_00559 0.57 -0.2 575,244 + CCNA_00559 0.57 -1.8 575,245 - CCNA_00559 0.57 +1.8 575,249 + CCNA_00559 0.57 -0.7 575,250 + CCNA_00559 0.58 +1.0 575,265 - CCNA_00559 0.59 +0.1 575,305 - CCNA_00559 0.62 +0.3 575,313 + CCNA_00559 0.63 -0.6 575,328 + CCNA_00559 0.64 +0.4 575,336 - CCNA_00559 0.65 -0.4 575,354 + CCNA_00559 0.67 +0.0 575,354 + CCNA_00559 0.67 -0.6 575,362 - CCNA_00559 0.67 -0.0 575,374 + CCNA_00559 0.68 +0.1 575,382 - CCNA_00559 0.69 -0.3 575,382 - CCNA_00559 0.69 -0.7 575,384 - CCNA_00559 0.69 -0.1 575,389 - CCNA_00559 0.70 +0.1 575,410 - CCNA_00559 0.71 -0.3 575,410 - CCNA_00559 0.71 +0.9 575,410 - CCNA_00559 0.71 +0.2 575,451 - CCNA_00559 0.75 +0.2 575,499 - CCNA_00559 0.79 +0.5 575,526 + CCNA_00559 0.82 -0.1 575,546 - CCNA_00559 0.83 -0.4 575,552 - CCNA_00559 0.84 +0.3 575,561 + CCNA_00559 0.85 -0.3 575,579 - CCNA_00559 0.86 +0.5 575,584 - CCNA_00559 0.87 +0.0 575,586 + CCNA_00559 0.87 -1.4 575,586 + CCNA_00559 0.87 +0.4 575,586 + CCNA_00559 0.87 -0.4 575,586 + CCNA_00559 0.87 -0.2 575,586 + CCNA_00559 0.87 -1.2 575,586 + CCNA_00559 0.87 -2.7 575,586 + CCNA_00559 0.87 -1.8 575,586 + CCNA_00559 0.87 -1.6 575,586 + CCNA_00559 0.87 -1.4 575,586 + CCNA_00559 0.87 -0.4 575,594 - CCNA_00559 0.87 +0.5 575,594 - CCNA_00559 0.87 +0.2 575,594 - CCNA_00559 0.87 -0.6 575,594 - CCNA_00559 0.87 +0.3 575,594 - CCNA_00559 0.87 -0.3 575,594 - CCNA_00559 0.87 -0.2 575,594 - CCNA_00559 0.87 +0.5 575,594 - CCNA_00559 0.87 +0.2 575,594 - CCNA_00559 0.87 +0.4 575,618 + CCNA_00559 0.90 -1.6 575,621 - CCNA_00559 0.90 -0.3 575,625 - +2.0 575,641 - -0.0 575,652 + -0.9 575,660 - +0.5 575,660 - +0.5 575,674 - +1.2 575,739 - +0.2 575,741 - +0.0 575,749 - +0.4 575,797 - -1.1 575,799 + +0.1 575,801 + +0.1 575,801 + +0.4 575,801 + -2.2 575,801 + -0.6 575,801 + -0.0 575,801 + -0.8 575,807 - -0.4 575,807 - -0.2 575,809 - +1.9 575,818 + -0.9 575,835 - -0.4 575,841 + -0.1 575,847 + +0.0 575,847 + -3.4 575,860 + +0.1 575,860 + +0.4 575,868 - CCNA_00560 0.10 -3.0 575,868 - CCNA_00560 0.10 -1.2 575,898 + CCNA_00560 0.16 -2.7 575,900 - CCNA_00560 0.17 -1.4 576,001 + CCNA_00560 0.36 -0.1 576,027 - CCNA_00560 0.41 +0.4 576,031 - CCNA_00560 0.42 +1.3 576,048 + CCNA_00560 0.45 -0.3 576,057 + CCNA_00560 0.47 +0.5 576,057 + CCNA_00560 0.47 +0.6 576,057 + CCNA_00560 0.47 +0.9 576,057 + CCNA_00560 0.47 -0.4 576,065 - CCNA_00560 0.49 +0.4 576,175 + CCNA_00560 0.70 -1.3 576,175 + CCNA_00560 0.70 -0.3 576,188 - CCNA_00560 0.73 -1.2 576,191 + CCNA_00560 0.73 -1.2 576,244 + CCNA_00560 0.84 -0.3 576,263 - CCNA_00560 0.87 -1.2 576,270 - CCNA_00560 0.89 -2.7 576,288 + +0.3 576,288 + +0.1 576,340 - +0.3 576,342 + -0.1 576,342 + +0.5 576,342 + -0.1 576,342 + -0.4 576,350 - -0.6 576,350 - -0.6 576,357 + +0.2 576,357 + +2.1 576,375 + CCNA_00561 0.15 -0.0 576,375 + CCNA_00561 0.15 -0.0 576,383 - CCNA_00561 0.17 -1.5 576,383 - CCNA_00561 0.17 +1.3 576,383 - CCNA_00561 0.17 -2.4 576,383 - CCNA_00561 0.17 -1.2 576,431 - CCNA_00561 0.31 +0.4 576,455 - CCNA_00561 0.38 +0.2 576,455 - CCNA_00561 0.38 +1.1 576,470 + CCNA_00561 0.42 +0.4 576,478 - CCNA_00561 0.45 +0.5 576,528 + CCNA_00561 0.59 +0.7 576,536 - CCNA_00561 0.61 -1.0 576,536 - +0.1 576,536 - CCNA_00561 0.61 -0.4 576,580 - CCNA_00561 0.74 -0.5 576,600 - CCNA_00561 0.80 -1.6 576,615 + CCNA_00561 0.84 +0.3 576,669 + +1.7 576,695 + -1.1 576,695 + +0.6 576,703 - +0.6 576,703 - +0.4 576,703 - -1.3 576,727 - -1.5 576,742 + +1.2 576,747 + -0.7 576,750 - -1.2 576,761 - -0.2 576,761 - +0.5 576,761 - +0.7 576,783 + CCNA_00562 0.11 -0.1 576,810 + CCNA_00562 0.14 +0.5 576,818 - CCNA_00562 0.14 -0.5 576,841 - CCNA_00562 0.17 -0.3 576,890 + CCNA_00562 0.21 +0.1 576,905 - CCNA_00562 0.23 +1.5 576,915 + CCNA_00562 0.24 -0.1 576,983 + CCNA_00562 0.30 +1.1 576,998 + CCNA_00562 0.31 +1.3 577,006 - CCNA_00562 0.32 +0.2 577,006 - CCNA_00562 0.32 -1.0 577,054 - CCNA_00562 0.37 -0.3 577,072 - CCNA_00562 0.38 +0.7 577,087 - CCNA_00562 0.40 -0.4 577,097 - CCNA_00562 0.41 -2.2 577,148 + CCNA_00562 0.46 -0.0 577,188 + CCNA_00562 0.49 -1.1 577,188 + CCNA_00562 0.49 +1.1 577,196 - CCNA_00562 0.50 +0.1 577,196 - CCNA_00562 0.50 -2.2 577,205 + CCNA_00562 0.51 -0.6 577,210 + CCNA_00562 0.51 -0.7 577,210 + CCNA_00562 0.51 -0.1 577,210 + CCNA_00562 0.51 -0.6 577,210 + CCNA_00562 0.51 +0.4 577,210 + CCNA_00562 0.51 -1.0 577,210 + CCNA_00562 0.51 +1.0 577,218 - CCNA_00562 0.52 -0.3 577,218 - CCNA_00562 0.52 -0.3 577,262 + CCNA_00562 0.56 +0.2 577,270 - CCNA_00562 0.57 -0.3 577,272 - CCNA_00562 0.57 -0.7 577,311 + CCNA_00562 0.61 +0.6 577,319 - CCNA_00562 0.62 -1.0
Or see this region's nucleotide sequence