Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1704

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1703 and DVU1704 are separated by 178 nucleotidesDVU1704 and DVU1705 are separated by 26 nucleotides DVU1703: DVU1703 - type I restriction-modification enzyme, R subunit (TIGR), at 1,777,728 to 1,781,027 DVU1703 DVU1704: DVU1704 - conserved hypothetical protein (TIGR), at 1,781,206 to 1,781,433 DVU1704 DVU1705: DVU1705 - type I restriction-modification enzyme, S subunit (TIGR), at 1,781,460 to 1,782,710 DVU1705 Position (kb) 1781 1782Strain fitness (log2 ratio) -1 0 1at 1780.251 kb on - strand, within DVU1703at 1780.251 kb on - strand, within DVU1703at 1780.251 kb on - strand, within DVU1703at 1780.251 kb on - strand, within DVU1703at 1780.251 kb on - strand, within DVU1703at 1780.251 kb on - strand, within DVU1703at 1780.306 kb on + strand, within DVU1703at 1780.348 kb on + strand, within DVU1703at 1780.348 kb on + strand, within DVU1703at 1780.356 kb on - strand, within DVU1703at 1780.358 kb on + strand, within DVU1703at 1780.405 kb on + strand, within DVU1703at 1780.405 kb on + strand, within DVU1703at 1780.528 kb on + strand, within DVU1703at 1780.660 kb on - strand, within DVU1703at 1780.758 kb on + strandat 1780.758 kb on + strandat 1780.766 kb on - strandat 1780.766 kb on - strandat 1780.770 kb on + strandat 1780.842 kb on - strandat 1780.868 kb on - strandat 1780.887 kb on - strandat 1780.915 kb on + strandat 1780.962 kb on + strandat 1781.003 kb on - strandat 1781.058 kb on - strandat 1781.139 kb on - strandat 1781.166 kb on - strandat 1781.168 kb on + strandat 1781.298 kb on - strand, within DVU1704at 1781.428 kb on + strandat 1781.443 kb on - strandat 1781.461 kb on + strandat 1781.496 kb on - strandat 1781.528 kb on - strandat 1781.528 kb on - strandat 1781.607 kb on - strand, within DVU1705at 1782.188 kb on - strand, within DVU1705

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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1,780,251 - DVU1703 0.76 -0.2
1,780,251 - DVU1703 0.76 -0.4
1,780,251 - DVU1703 0.76 -0.1
1,780,251 - DVU1703 0.76 -0.4
1,780,251 - DVU1703 0.76 -0.3
1,780,251 - DVU1703 0.76 +0.6
1,780,306 + DVU1703 0.78 -0.2
1,780,348 + DVU1703 0.79 -0.5
1,780,348 + DVU1703 0.79 -0.8
1,780,356 - DVU1703 0.80 -1.5
1,780,358 + DVU1703 0.80 -0.2
1,780,405 + DVU1703 0.81 -0.5
1,780,405 + DVU1703 0.81 -0.4
1,780,528 + DVU1703 0.85 -1.1
1,780,660 - DVU1703 0.89 -0.1
1,780,758 + -0.3
1,780,758 + +1.0
1,780,766 - -0.3
1,780,766 - +0.7
1,780,770 + +0.5
1,780,842 - -0.2
1,780,868 - -0.3
1,780,887 - +0.7
1,780,915 + -0.3
1,780,962 + -1.1
1,781,003 - +0.1
1,781,058 - -0.1
1,781,139 - +0.9
1,781,166 - -0.1
1,781,168 + -0.5
1,781,298 - DVU1704 0.40 -1.0
1,781,428 + -0.1
1,781,443 - +1.0
1,781,461 + +1.4
1,781,496 - -1.5
1,781,528 - -0.2
1,781,528 - -1.6
1,781,607 - DVU1705 0.12 +0.0
1,782,188 - DVU1705 0.58 -0.4

Or see this region's nucleotide sequence