Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1510

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1507 and DVU1508 overlap by 1 nucleotidesDVU1508 and DVU1509 are separated by 163 nucleotidesDVU1509 and DVU1510 overlap by 8 nucleotidesDVU1510 and DVU1511 are separated by 108 nucleotidesDVU1511 and DVU1513 are separated by 249 nucleotides DVU1507: DVU1507 - hypothetical protein (TIGR), at 1,581,129 to 1,581,479 DVU1507 DVU1508: DVU1508 - conserved hypothetical protein (TIGR), at 1,581,479 to 1,581,886 DVU1508 DVU1509: DVU1509 - conserved hypothetical protein (TIGR), at 1,582,050 to 1,582,439 DVU1509 DVU1510: DVU1510 - hypothetical protein (TIGR), at 1,582,432 to 1,582,995 DVU1510 DVU1511: DVU1511 - hypothetical protein (TIGR), at 1,583,104 to 1,583,334 DVU1511 DVU1513: DVU1513 - conserved hypothetical protein (TIGR), at 1,583,584 to 1,584,078 DVU1513 Position (kb) 1582 1583Strain fitness (log2 ratio) -3 -2 -1 0 1at 1581.992 kb on - strandat 1582.019 kb on - strandat 1582.023 kb on + strandat 1582.033 kb on + strandat 1582.429 kb on + strandat 1582.898 kb on + strand, within DVU1510at 1583.091 kb on + strandat 1583.195 kb on + strand, within DVU1511at 1583.281 kb on - strand, within DVU1511at 1583.293 kb on + strand, within DVU1511at 1583.434 kb on + strandat 1583.442 kb on - strandat 1583.498 kb on + strandat 1583.513 kb on + strandat 1583.558 kb on + strandat 1583.582 kb on + strandat 1583.582 kb on + strandat 1583.590 kb on - strandat 1583.590 kb on - strandat 1583.702 kb on + strand, within DVU1513at 1583.703 kb on + strand, within DVU1513at 1583.710 kb on - strand, within DVU1513at 1583.837 kb on - strand, within DVU1513at 1583.898 kb on + strand, within DVU1513at 1583.906 kb on - strand, within DVU1513at 1583.947 kb on - strand, within DVU1513

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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1,581,992 - -0.2
1,582,019 - -0.1
1,582,023 + -3.0
1,582,033 + -1.8
1,582,429 + -3.5
1,582,898 + DVU1510 0.83 -1.0
1,583,091 + -3.7
1,583,195 + DVU1511 0.39 -0.3
1,583,281 - DVU1511 0.77 -0.0
1,583,293 + DVU1511 0.82 -0.2
1,583,434 + -1.6
1,583,442 - +0.2
1,583,498 + -1.4
1,583,513 + -0.0
1,583,558 + -0.9
1,583,582 + +0.5
1,583,582 + -0.3
1,583,590 - -0.0
1,583,590 - +0.0
1,583,702 + DVU1513 0.24 -0.5
1,583,703 + DVU1513 0.24 +0.3
1,583,710 - DVU1513 0.25 -1.9
1,583,837 - DVU1513 0.51 -0.2
1,583,898 + DVU1513 0.63 -0.0
1,583,906 - DVU1513 0.65 +0.0
1,583,947 - DVU1513 0.73 -0.3

Or see this region's nucleotide sequence