Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt icd and DVU0478 are separated by 98 nucleotides DVU0478 and DVU0479 are separated by 123 nucleotides
DVU0477: icd - isocitrate dehydrogenase, NADP-dependent (TIGR), at 542,367 to 543,509
icd
DVU0478: DVU0478 - Ser/Thr protein phosphatase family (TIGR), at 543,608 to 544,471
DVU0478
DVU0479: DVU0479 - serine/threonine protein kinase, putative (TIGR), at 544,595 to 546,094
DVU0479
Position (kb) 543
544
545 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 543.514 kb on - strand at 543.514 kb on - strand at 543.514 kb on - strand at 543.639 kb on - strand at 543.693 kb on - strand at 543.746 kb on + strand, within DVU0478 at 543.768 kb on - strand, within DVU0478 at 543.816 kb on + strand, within DVU0478 at 544.065 kb on + strand, within DVU0478 at 544.073 kb on - strand, within DVU0478 at 544.112 kb on - strand, within DVU0478 at 544.220 kb on + strand, within DVU0478 at 544.220 kb on + strand, within DVU0478 at 544.221 kb on + strand, within DVU0478 at 544.228 kb on - strand, within DVU0478 at 544.234 kb on - strand, within DVU0478 at 544.239 kb on - strand, within DVU0478 at 544.256 kb on + strand, within DVU0478 at 544.374 kb on + strand, within DVU0478 at 544.382 kb on - strand, within DVU0478 at 544.382 kb on - strand, within DVU0478 at 544.455 kb on + strand at 544.557 kb on + strand at 544.661 kb on + strand at 544.687 kb on - strand at 544.787 kb on + strand, within DVU0479 at 544.795 kb on - strand, within DVU0479 at 544.900 kb on - strand, within DVU0479 at 544.932 kb on - strand, within DVU0479 at 544.951 kb on - strand, within DVU0479 at 544.953 kb on + strand, within DVU0479 at 544.961 kb on - strand, within DVU0479 at 545.060 kb on - strand, within DVU0479 at 545.068 kb on - strand, within DVU0479 at 545.123 kb on - strand, within DVU0479 at 545.158 kb on + strand, within DVU0479 at 545.190 kb on + strand, within DVU0479 at 545.263 kb on + strand, within DVU0479 at 545.268 kb on + strand, within DVU0479 at 545.425 kb on + strand, within DVU0479
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM remove 543,514 - -0.3 543,514 - -0.3 543,514 - -0.3 543,639 - -0.6 543,693 - -0.6 543,746 + DVU0478 0.16 -0.9 543,768 - DVU0478 0.19 -2.5 543,816 + DVU0478 0.24 -0.2 544,065 + DVU0478 0.53 -1.2 544,073 - DVU0478 0.54 -0.2 544,112 - DVU0478 0.58 +0.1 544,220 + DVU0478 0.71 -0.7 544,220 + DVU0478 0.71 +0.1 544,221 + DVU0478 0.71 -0.7 544,228 - DVU0478 0.72 -1.7 544,234 - DVU0478 0.72 +1.5 544,239 - DVU0478 0.73 -1.7 544,256 + DVU0478 0.75 +0.1 544,374 + DVU0478 0.89 +1.4 544,382 - DVU0478 0.90 -0.6 544,382 - DVU0478 0.90 -1.3 544,455 + -0.6 544,557 + +1.7 544,661 + +0.6 544,687 - -0.7 544,787 + DVU0479 0.13 -0.4 544,795 - DVU0479 0.13 -0.6 544,900 - DVU0479 0.20 +1.5 544,932 - DVU0479 0.22 -0.9 544,951 - DVU0479 0.24 +0.2 544,953 + DVU0479 0.24 -0.1 544,961 - DVU0479 0.24 -0.3 545,060 - DVU0479 0.31 -1.0 545,068 - DVU0479 0.32 -1.8 545,123 - DVU0479 0.35 -0.3 545,158 + DVU0479 0.38 +0.0 545,190 + DVU0479 0.40 +0.3 545,263 + DVU0479 0.45 -0.5 545,268 + DVU0479 0.45 -3.1 545,425 + DVU0479 0.55 -0.4
Or see this region's nucleotide sequence