Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0471

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttrpB-2 and trpA overlap by 4 nucleotidestrpA and DVU0474 are separated by 763 nucleotides DVU0470: trpB-2 - tryptophan synthase, beta subunit (TIGR), at 537,721 to 538,908 trpB-2 DVU0471: trpA - tryptophan synthase, alpha subunit (TIGR), at 538,905 to 539,678 trpA DVU0474: DVU0474 - ISDvu4, transposase (TIGR), at 540,442 to 541,491 DVU0474 Position (kb) 538 539 540Strain fitness (log2 ratio) -2 -1 0 1 2at 538.023 kb on - strand, within trpB-2at 538.233 kb on + strand, within trpB-2at 538.236 kb on - strand, within trpB-2at 538.244 kb on - strand, within trpB-2at 538.254 kb on + strand, within trpB-2at 538.264 kb on + strand, within trpB-2at 538.432 kb on + strand, within trpB-2at 538.527 kb on - strand, within trpB-2at 538.529 kb on - strand, within trpB-2at 538.594 kb on - strand, within trpB-2at 538.814 kb on + strandat 538.825 kb on - strandat 538.855 kb on + strandat 538.863 kb on - strandat 538.863 kb on - strandat 538.873 kb on + strandat 539.142 kb on - strand, within trpAat 539.152 kb on - strand, within trpAat 539.178 kb on + strand, within trpAat 539.194 kb on + strand, within trpAat 539.202 kb on - strand, within trpAat 539.202 kb on - strand, within trpAat 539.202 kb on - strand, within trpAat 539.213 kb on + strand, within trpAat 539.279 kb on - strand, within trpAat 539.366 kb on + strand, within trpAat 539.371 kb on + strand, within trpAat 539.434 kb on - strand, within trpAat 539.450 kb on - strand, within trpAat 539.618 kb on - strandat 539.812 kb on + strandat 539.872 kb on - strandat 540.100 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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538,023 - trpB-2 DVU0470 0.25 +1.4
538,233 + trpB-2 DVU0470 0.43 -0.1
538,236 - trpB-2 DVU0470 0.43 +0.6
538,244 - trpB-2 DVU0470 0.44 -1.2
538,254 + trpB-2 DVU0470 0.45 -2.0
538,264 + trpB-2 DVU0470 0.46 +0.1
538,432 + trpB-2 DVU0470 0.60 -0.7
538,527 - trpB-2 DVU0470 0.68 +1.2
538,529 - trpB-2 DVU0470 0.68 -0.3
538,594 - trpB-2 DVU0470 0.73 -0.4
538,814 + +0.1
538,825 - -1.1
538,855 + +2.1
538,863 - +0.3
538,863 - +1.4
538,873 + +1.8
539,142 - trpA DVU0471 0.31 -0.8
539,152 - trpA DVU0471 0.32 -0.9
539,178 + trpA DVU0471 0.35 -0.7
539,194 + trpA DVU0471 0.37 +0.5
539,202 - trpA DVU0471 0.38 -1.5
539,202 - trpA DVU0471 0.38 -1.3
539,202 - trpA DVU0471 0.38 -1.6
539,213 + trpA DVU0471 0.40 -0.8
539,279 - trpA DVU0471 0.48 -1.1
539,366 + trpA DVU0471 0.60 -1.3
539,371 + trpA DVU0471 0.60 +1.1
539,434 - trpA DVU0471 0.68 -2.0
539,450 - trpA DVU0471 0.70 -1.3
539,618 - +1.0
539,812 + -0.2
539,872 - +0.2
540,100 + +0.0

Or see this region's nucleotide sequence