Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DORF5389 and DVU0458 are separated by 378 nucleotides DVU0458 and DVU0459 are separated by 41 nucleotides DVU0459 and DVU0460 are separated by 214 nucleotides DVU0460 and DVU0461 are separated by 8 nucleotides DVU0461 and DVU0462 are separated by 2 nucleotides
DORF5389: DORF5389 - no description, at 526,609 to 526,767
DORF5389
DVU0458: DVU0458 - hypothetical protein (TIGR), at 527,146 to 527,313
DVU0458
DVU0459: DVU0459 - hypothetical protein (TIGR), at 527,355 to 527,456
DVU0459
DVU0460: DVU0460 - predicted phospho-2-dehydro-3-deoxyheptonate aldolase (TIGR), at 527,671 to 528,471
DVU0460
DVU0461: DVU0461 - predicted 3-dehydroquinate synthase (TIGR), at 528,480 to 529,451
DVU0461
DVU0462: DVU0462 - chorismate mutase/prephenate dehydratase (TIGR), at 529,454 to 530,629
DVU0462
Position (kb) 527
528
529 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 526.708 kb on - strand, within DORF5389 at 526.748 kb on - strand, within DORF5389 at 526.817 kb on + strand at 526.823 kb on - strand at 526.825 kb on - strand at 526.842 kb on - strand at 526.884 kb on + strand at 527.013 kb on - strand at 527.016 kb on + strand at 527.024 kb on - strand at 527.031 kb on + strand at 527.069 kb on + strand at 527.363 kb on + strand at 527.445 kb on - strand, within DVU0459 at 527.601 kb on - strand at 527.661 kb on + strand at 527.688 kb on + strand at 527.688 kb on + strand at 527.848 kb on + strand, within DVU0460 at 528.006 kb on + strand, within DVU0460 at 528.075 kb on + strand, within DVU0460 at 528.204 kb on + strand, within DVU0460 at 528.396 kb on + strand at 528.396 kb on + strand at 528.404 kb on - strand at 528.404 kb on - strand at 528.421 kb on + strand at 528.425 kb on + strand at 528.426 kb on + strand at 528.439 kb on + strand at 528.444 kb on + strand at 528.457 kb on - strand at 528.731 kb on - strand, within DVU0461
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM remove 526,708 - DORF5389 0.62 -0.6 526,748 - DORF5389 0.87 +0.6 526,817 + -0.1 526,823 - +1.2 526,825 - -2.9 526,842 - -1.9 526,884 + -0.2 527,013 - -3.2 527,016 + -0.1 527,024 - -0.0 527,031 + -0.0 527,069 + -0.3 527,363 + -0.3 527,445 - DVU0459 0.88 -0.9 527,601 - -0.0 527,661 + -0.5 527,688 + -1.8 527,688 + -3.7 527,848 + DVU0460 0.22 +0.3 528,006 + DVU0460 0.42 +0.3 528,075 + DVU0460 0.50 +0.2 528,204 + DVU0460 0.67 -3.4 528,396 + +0.4 528,396 + -2.6 528,404 - -0.5 528,404 - -0.4 528,421 + -3.4 528,425 + -0.1 528,426 + -2.0 528,439 + -0.8 528,444 + -0.2 528,457 - -0.5 528,731 - DVU0461 0.26 -2.1
Or see this region's nucleotide sequence