Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hit and hup-1 are separated by 27 nucleotides hup-1 and rlpA are separated by 347 nucleotides rlpA and DVU0398 are separated by 80 nucleotides
DVU0395: hit - HIT family protein (TIGR), at 443,991 to 444,410
hit
DVU0396: hup-1 - DNA-binding protein HU (TIGR), at 444,438 to 444,725
hup-1
DVU0397: rlpA - rare lipoprotein A, putative (TIGR), at 445,073 to 445,804
rlpA
DVU0398: DVU0398 - HMGL-like domain protein (TIGR), at 445,885 to 447,711
DVU0398
Position (kb) 445
446 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 444.176 kb on + strand, within hit at 444.234 kb on + strand, within hit at 444.242 kb on - strand, within hit at 444.242 kb on - strand, within hit at 444.394 kb on - strand at 444.857 kb on - strand at 444.871 kb on + strand at 444.980 kb on - strand at 444.985 kb on - strand at 445.134 kb on + strand at 445.168 kb on - strand, within rlpA at 445.270 kb on - strand, within rlpA at 445.290 kb on + strand, within rlpA at 445.290 kb on + strand, within rlpA at 445.300 kb on + strand, within rlpA at 445.308 kb on - strand, within rlpA at 445.377 kb on - strand, within rlpA at 445.389 kb on + strand, within rlpA at 445.397 kb on - strand, within rlpA at 445.492 kb on + strand, within rlpA at 445.497 kb on + strand, within rlpA at 445.515 kb on - strand, within rlpA at 445.572 kb on + strand, within rlpA at 445.619 kb on + strand, within rlpA at 445.662 kb on + strand, within rlpA at 445.662 kb on + strand, within rlpA at 445.662 kb on + strand, within rlpA at 445.662 kb on + strand, within rlpA at 445.662 kb on + strand, within rlpA at 445.662 kb on + strand, within rlpA at 445.662 kb on + strand, within rlpA at 445.662 kb on + strand, within rlpA at 445.662 kb on + strand, within rlpA at 445.670 kb on - strand, within rlpA at 445.670 kb on - strand, within rlpA at 445.670 kb on - strand, within rlpA at 445.670 kb on - strand, within rlpA at 445.670 kb on - strand, within rlpA at 445.670 kb on - strand, within rlpA at 445.670 kb on - strand, within rlpA at 445.670 kb on - strand, within rlpA at 445.670 kb on - strand, within rlpA at 445.681 kb on + strand, within rlpA at 445.703 kb on + strand, within rlpA at 445.705 kb on - strand, within rlpA at 445.720 kb on + strand, within rlpA at 445.760 kb on - strand at 445.760 kb on - strand at 445.802 kb on - strand at 445.846 kb on + strand at 445.847 kb on - strand at 445.862 kb on + strand at 445.877 kb on + strand at 445.877 kb on + strand at 445.877 kb on + strand at 446.036 kb on - strand at 446.067 kb on + strand at 446.070 kb on - strand, within DVU0398 at 446.367 kb on + strand, within DVU0398
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM remove 444,176 + hit DVU0395 0.44 -0.0 444,234 + hit DVU0395 0.58 -1.3 444,242 - hit DVU0395 0.60 +1.0 444,242 - hit DVU0395 0.60 -0.7 444,394 - +0.1 444,857 - -0.7 444,871 + -1.3 444,980 - -0.6 444,985 - -0.3 445,134 + -1.3 445,168 - rlpA DVU0397 0.13 +0.2 445,270 - rlpA DVU0397 0.27 -0.4 445,290 + rlpA DVU0397 0.30 -1.4 445,290 + rlpA DVU0397 0.30 +0.1 445,300 + rlpA DVU0397 0.31 -0.7 445,308 - rlpA DVU0397 0.32 -2.3 445,377 - rlpA DVU0397 0.42 -1.5 445,389 + rlpA DVU0397 0.43 -0.7 445,397 - rlpA DVU0397 0.44 -1.0 445,492 + rlpA DVU0397 0.57 -0.6 445,497 + rlpA DVU0397 0.58 +0.4 445,515 - rlpA DVU0397 0.60 -2.7 445,572 + rlpA DVU0397 0.68 -0.5 445,619 + rlpA DVU0397 0.75 -0.5 445,662 + rlpA DVU0397 0.80 -0.6 445,662 + rlpA DVU0397 0.80 -0.7 445,662 + rlpA DVU0397 0.80 -0.5 445,662 + rlpA DVU0397 0.80 -2.3 445,662 + rlpA DVU0397 0.80 -1.0 445,662 + rlpA DVU0397 0.80 -0.8 445,662 + rlpA DVU0397 0.80 -1.1 445,662 + rlpA DVU0397 0.80 -1.0 445,662 + rlpA DVU0397 0.80 -0.9 445,670 - rlpA DVU0397 0.82 -1.7 445,670 - rlpA DVU0397 0.82 -0.9 445,670 - rlpA DVU0397 0.82 -1.1 445,670 - rlpA DVU0397 0.82 -0.0 445,670 - rlpA DVU0397 0.82 -0.5 445,670 - rlpA DVU0397 0.82 -2.8 445,670 - rlpA DVU0397 0.82 -1.1 445,670 - rlpA DVU0397 0.82 -0.5 445,670 - rlpA DVU0397 0.82 -1.0 445,681 + rlpA DVU0397 0.83 -1.2 445,703 + rlpA DVU0397 0.86 -1.5 445,705 - rlpA DVU0397 0.86 -1.1 445,720 + rlpA DVU0397 0.88 -1.1 445,760 - -0.7 445,760 - -0.8 445,802 - +0.0 445,846 + +0.1 445,847 - -0.4 445,862 + +0.0 445,877 + -0.7 445,877 + -0.3 445,877 + -0.1 446,036 - -0.1 446,067 + -2.0 446,070 - DVU0398 0.10 -2.3 446,367 + DVU0398 0.26 -1.6
Or see this region's nucleotide sequence