Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt glnH and DVU0108 are separated by 291 nucleotides DVU0108 and hydH are separated by 662 nucleotides
DVU0107: glnH - glutamine ABC transporter, periplasmic glutamine-binding protein (TIGR), at 139,770 to 140,519
glnH
DVU0108: DVU0108 - hypothetical protein (TIGR), at 140,811 to 140,918
DVU0108
DVU0109: hydH - sensor histidine kinase (TIGR), at 141,581 to 142,687
hydH
Position (kb) 140
141 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 139.831 kb on + strand at 139.831 kb on + strand at 139.831 kb on + strand at 139.839 kb on - strand at 139.849 kb on - strand, within glnH at 139.897 kb on + strand, within glnH at 139.905 kb on - strand, within glnH at 139.905 kb on - strand, within glnH at 139.930 kb on + strand, within glnH at 139.930 kb on + strand, within glnH at 139.930 kb on + strand, within glnH at 139.936 kb on + strand, within glnH at 139.937 kb on - strand, within glnH at 139.938 kb on - strand, within glnH at 139.947 kb on + strand, within glnH at 139.967 kb on + strand, within glnH at 140.011 kb on + strand, within glnH at 140.044 kb on + strand, within glnH at 140.136 kb on + strand, within glnH at 140.144 kb on - strand, within glnH at 140.146 kb on + strand, within glnH at 140.154 kb on - strand, within glnH at 140.176 kb on + strand, within glnH at 140.336 kb on - strand, within glnH at 140.343 kb on - strand, within glnH at 140.399 kb on - strand, within glnH at 140.465 kb on - strand at 140.501 kb on - strand at 140.543 kb on + strand at 140.564 kb on - strand at 140.658 kb on + strand at 140.666 kb on + strand at 140.668 kb on + strand at 140.757 kb on + strand at 140.757 kb on + strand at 140.788 kb on + strand at 140.808 kb on - strand at 140.818 kb on - strand at 140.898 kb on - strand, within DVU0108 at 140.898 kb on - strand, within DVU0108 at 140.927 kb on - strand at 141.065 kb on + strand at 141.155 kb on + strand at 141.163 kb on - strand at 141.199 kb on - strand at 141.215 kb on + strand at 141.239 kb on + strand at 141.247 kb on - strand at 141.284 kb on + strand at 141.302 kb on - strand at 141.302 kb on - strand at 141.355 kb on - strand at 141.369 kb on - strand at 141.373 kb on + strand at 141.549 kb on + strand at 141.550 kb on + strand at 141.574 kb on - strand at 141.629 kb on - strand at 141.670 kb on - strand at 141.691 kb on - strand at 141.693 kb on + strand, within hydH at 141.697 kb on - strand, within hydH at 141.711 kb on + strand, within hydH at 141.721 kb on + strand, within hydH at 141.775 kb on + strand, within hydH at 141.783 kb on - strand, within hydH at 141.837 kb on - strand, within hydH at 141.838 kb on - strand, within hydH
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM remove 139,831 + -1.6 139,831 + +0.2 139,831 + -0.8 139,839 - -0.4 139,849 - glnH DVU0107 0.11 +0.1 139,897 + glnH DVU0107 0.17 -0.1 139,905 - glnH DVU0107 0.18 +0.1 139,905 - glnH DVU0107 0.18 -0.2 139,930 + glnH DVU0107 0.21 +0.1 139,930 + glnH DVU0107 0.21 +0.1 139,930 + glnH DVU0107 0.21 -0.2 139,936 + glnH DVU0107 0.22 +0.0 139,937 - glnH DVU0107 0.22 -1.3 139,938 - glnH DVU0107 0.22 -2.1 139,947 + glnH DVU0107 0.24 +0.4 139,967 + glnH DVU0107 0.26 -1.0 140,011 + glnH DVU0107 0.32 -0.6 140,044 + glnH DVU0107 0.37 -0.3 140,136 + glnH DVU0107 0.49 -0.9 140,144 - glnH DVU0107 0.50 -0.3 140,146 + glnH DVU0107 0.50 +0.2 140,154 - glnH DVU0107 0.51 +1.0 140,176 + glnH DVU0107 0.54 -0.1 140,336 - glnH DVU0107 0.75 +0.2 140,343 - glnH DVU0107 0.76 +0.4 140,399 - glnH DVU0107 0.84 -0.8 140,465 - -1.7 140,501 - +0.1 140,543 + +0.4 140,564 - -2.0 140,658 + -1.3 140,666 + -0.3 140,668 + +0.2 140,757 + +0.0 140,757 + -0.2 140,788 + +0.2 140,808 - +0.0 140,818 - -0.8 140,898 - DVU0108 0.81 -0.3 140,898 - DVU0108 0.81 -2.0 140,927 - -0.1 141,065 + -0.7 141,155 + -0.4 141,163 - -0.1 141,199 - -0.4 141,215 + -0.3 141,239 + +0.4 141,247 - +1.0 141,284 + -0.4 141,302 - -0.2 141,302 - -2.2 141,355 - -0.9 141,369 - +0.4 141,373 + -0.4 141,549 + -0.3 141,550 + -0.4 141,574 - -0.6 141,629 - -0.6 141,670 - -1.5 141,691 - -0.2 141,693 + hydH DVU0109 0.10 -0.2 141,697 - hydH DVU0109 0.10 -0.4 141,711 + hydH DVU0109 0.12 -0.4 141,721 + hydH DVU0109 0.13 +0.4 141,775 + hydH DVU0109 0.18 -0.2 141,783 - hydH DVU0109 0.18 +2.0 141,837 - hydH DVU0109 0.23 -2.9 141,838 - hydH DVU0109 0.23 -0.2
Or see this region's nucleotide sequence