Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt motA-1 and DVU0051 are separated by 275 nucleotides DVU0051 and era are separated by 92 nucleotides
DVU0050: motA-1 - chemotaxis protein MotA (TIGR), at 55,007 to 55,765
motA-1
DVU0051: DVU0051 - conserved hypothetical protein TIGR00044 (TIGR), at 56,041 to 56,754
DVU0051
DVU0052: era - GTP-binding protein Era (TIGR), at 56,847 to 57,773
era
Position (kb) 56
57 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 55.041 kb on - strand at 55.118 kb on + strand, within motA-1 at 55.189 kb on - strand, within motA-1 at 55.203 kb on - strand, within motA-1 at 55.228 kb on - strand, within motA-1 at 55.257 kb on + strand, within motA-1 at 55.309 kb on + strand, within motA-1 at 55.309 kb on + strand, within motA-1 at 55.317 kb on - strand, within motA-1 at 55.372 kb on + strand, within motA-1 at 55.382 kb on + strand, within motA-1 at 55.390 kb on - strand, within motA-1 at 55.408 kb on + strand, within motA-1 at 55.408 kb on + strand, within motA-1 at 55.408 kb on + strand, within motA-1 at 55.416 kb on - strand, within motA-1 at 55.416 kb on - strand, within motA-1 at 55.540 kb on + strand, within motA-1 at 55.540 kb on - strand, within motA-1 at 55.548 kb on - strand, within motA-1 at 55.561 kb on - strand, within motA-1 at 55.661 kb on - strand, within motA-1 at 55.665 kb on + strand, within motA-1 at 55.665 kb on + strand, within motA-1 at 55.685 kb on - strand, within motA-1 at 55.723 kb on + strand at 55.723 kb on + strand at 55.735 kb on - strand at 55.768 kb on - strand at 55.768 kb on - strand at 55.781 kb on - strand at 55.841 kb on - strand at 55.843 kb on + strand at 55.843 kb on + strand at 55.851 kb on - strand at 55.851 kb on - strand at 55.851 kb on - strand at 55.883 kb on + strand at 55.901 kb on - strand at 55.910 kb on - strand at 55.925 kb on - strand at 55.935 kb on + strand at 55.967 kb on - strand at 55.980 kb on + strand at 55.980 kb on + strand at 56.004 kb on + strand at 56.008 kb on + strand at 56.025 kb on - strand at 56.026 kb on - strand at 56.070 kb on + strand at 56.090 kb on - strand at 56.115 kb on + strand, within DVU0051 at 56.172 kb on + strand, within DVU0051 at 56.172 kb on + strand, within DVU0051 at 56.180 kb on - strand, within DVU0051 at 56.180 kb on - strand, within DVU0051 at 56.180 kb on - strand, within DVU0051 at 56.266 kb on - strand, within DVU0051 at 56.268 kb on + strand, within DVU0051 at 56.276 kb on - strand, within DVU0051 at 56.276 kb on - strand, within DVU0051 at 56.276 kb on - strand, within DVU0051 at 56.331 kb on - strand, within DVU0051 at 56.362 kb on - strand, within DVU0051 at 56.387 kb on - strand, within DVU0051 at 56.456 kb on + strand, within DVU0051 at 56.456 kb on + strand, within DVU0051 at 56.456 kb on + strand, within DVU0051 at 56.464 kb on - strand, within DVU0051 at 56.464 kb on - strand, within DVU0051 at 56.464 kb on - strand, within DVU0051 at 56.464 kb on - strand, within DVU0051 at 56.464 kb on - strand, within DVU0051 at 56.464 kb on - strand, within DVU0051 at 56.464 kb on - strand, within DVU0051 at 56.464 kb on - strand, within DVU0051 at 56.494 kb on - strand, within DVU0051 at 56.508 kb on - strand, within DVU0051 at 56.523 kb on + strand, within DVU0051 at 56.576 kb on + strand, within DVU0051 at 56.631 kb on + strand, within DVU0051 at 56.665 kb on + strand, within DVU0051 at 56.713 kb on + strand at 56.845 kb on + strand at 56.864 kb on + strand at 56.872 kb on - strand at 56.872 kb on - strand at 56.899 kb on - strand at 56.899 kb on - strand at 56.899 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM remove 55,041 - +0.0 55,118 + motA-1 DVU0050 0.15 +0.0 55,189 - motA-1 DVU0050 0.24 +0.8 55,203 - motA-1 DVU0050 0.26 -0.2 55,228 - motA-1 DVU0050 0.29 +0.7 55,257 + motA-1 DVU0050 0.33 -1.4 55,309 + motA-1 DVU0050 0.40 -0.8 55,309 + motA-1 DVU0050 0.40 -0.1 55,317 - motA-1 DVU0050 0.41 +0.0 55,372 + motA-1 DVU0050 0.48 +1.5 55,382 + motA-1 DVU0050 0.49 +0.2 55,390 - motA-1 DVU0050 0.50 -0.1 55,408 + motA-1 DVU0050 0.53 +0.2 55,408 + motA-1 DVU0050 0.53 -0.7 55,408 + motA-1 DVU0050 0.53 +0.3 55,416 - motA-1 DVU0050 0.54 +1.6 55,416 - motA-1 DVU0050 0.54 +0.1 55,540 + motA-1 DVU0050 0.70 +1.6 55,540 - motA-1 DVU0050 0.70 -0.1 55,548 - motA-1 DVU0050 0.71 -0.2 55,561 - motA-1 DVU0050 0.73 -1.2 55,661 - motA-1 DVU0050 0.86 -0.1 55,665 + motA-1 DVU0050 0.87 -0.2 55,665 + motA-1 DVU0050 0.87 -0.3 55,685 - motA-1 DVU0050 0.89 -3.3 55,723 + +1.8 55,723 + +0.3 55,735 - +0.2 55,768 - -0.3 55,768 - -0.6 55,781 - -2.4 55,841 - +0.3 55,843 + -0.5 55,843 + +0.6 55,851 - -0.5 55,851 - -0.2 55,851 - -0.3 55,883 + +1.6 55,901 - -0.3 55,910 - +0.2 55,925 - +0.4 55,935 + -0.5 55,967 - -0.4 55,980 + +0.5 55,980 + -0.2 56,004 + -1.3 56,008 + -1.4 56,025 - -0.4 56,026 - +0.0 56,070 + -0.9 56,090 - -1.4 56,115 + DVU0051 0.10 -1.2 56,172 + DVU0051 0.18 -0.5 56,172 + DVU0051 0.18 -1.1 56,180 - DVU0051 0.19 -1.4 56,180 - DVU0051 0.19 -0.7 56,180 - DVU0051 0.19 +0.5 56,266 - DVU0051 0.32 -0.9 56,268 + DVU0051 0.32 -1.3 56,276 - DVU0051 0.33 -1.1 56,276 - DVU0051 0.33 +0.6 56,276 - DVU0051 0.33 -0.2 56,331 - DVU0051 0.41 -1.2 56,362 - DVU0051 0.45 -0.9 56,387 - DVU0051 0.48 -0.9 56,456 + DVU0051 0.58 -1.6 56,456 + DVU0051 0.58 -0.8 56,456 + DVU0051 0.58 -1.3 56,464 - DVU0051 0.59 -0.6 56,464 - DVU0051 0.59 -1.9 56,464 - DVU0051 0.59 -0.8 56,464 - DVU0051 0.59 -1.6 56,464 - DVU0051 0.59 +0.4 56,464 - DVU0051 0.59 -0.3 56,464 - DVU0051 0.59 -1.4 56,464 - DVU0051 0.59 -1.1 56,494 - DVU0051 0.63 -1.2 56,508 - DVU0051 0.65 -0.4 56,523 + DVU0051 0.68 -0.8 56,576 + DVU0051 0.75 -1.7 56,631 + DVU0051 0.83 -0.0 56,665 + DVU0051 0.87 -1.0 56,713 + -0.0 56,845 + -0.2 56,864 + -0.0 56,872 - +0.9 56,872 - +0.2 56,899 - +1.8 56,899 - +0.5 56,899 - +0.1
Or see this region's nucleotide sequence