Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3392

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDORF24761 and glnA are separated by 458 nucleotidesglnA and DVU3393 are separated by 39 nucleotidesDVU3393 and DVU3394 are separated by 0 nucleotidesDVU3394 and DVU3395 are separated by 142 nucleotides DORF24761: DORF24761 - SEED: FIG00604061: hypothetical protein, at 3,566,161 to 3,567,015 DORF24761 DVU3392: glnA - glutamine synthetase, type I (TIGR), at 3,567,474 to 3,568,817 glnA DVU3393: DVU3393 - hypothetical protein (TIGR), at 3,568,857 to 3,569,081 DVU3393 DVU3394: DVU3394 - hypothetical protein (TIGR), at 3,569,082 to 3,569,261 DVU3394 DVU3395: DVU3395 - peptidase, M23/M37 family (TIGR), at 3,569,404 to 3,570,714 DVU3395 Position (kb) 3567 3568 3569Strain fitness (log2 ratio) -3 -2 -1 0 1at 3566.546 kb on - strand, within DORF24761at 3566.566 kb on + strand, within DORF24761at 3566.584 kb on + strand, within DORF24761at 3566.597 kb on + strand, within DORF24761at 3566.701 kb on + strand, within DORF24761at 3566.816 kb on - strand, within DORF24761at 3567.026 kb on + strandat 3567.034 kb on - strandat 3567.041 kb on - strandat 3567.161 kb on - strandat 3567.187 kb on - strandat 3567.201 kb on - strandat 3567.219 kb on - strandat 3567.233 kb on + strandat 3567.247 kb on + strandat 3567.313 kb on + strandat 3567.398 kb on - strandat 3567.404 kb on + strandat 3567.450 kb on - strandat 3567.541 kb on - strandat 3567.854 kb on + strand, within glnAat 3567.863 kb on - strand, within glnAat 3567.863 kb on - strand, within glnAat 3567.913 kb on + strand, within glnAat 3567.921 kb on - strand, within glnAat 3567.955 kb on + strand, within glnAat 3568.060 kb on + strand, within glnAat 3568.060 kb on + strand, within glnAat 3568.068 kb on - strand, within glnAat 3568.112 kb on - strand, within glnAat 3568.223 kb on + strand, within glnAat 3568.260 kb on + strand, within glnAat 3568.265 kb on + strand, within glnAat 3568.307 kb on + strand, within glnAat 3568.307 kb on + strand, within glnAat 3568.425 kb on + strand, within glnAat 3568.516 kb on - strand, within glnAat 3568.532 kb on + strand, within glnAat 3568.537 kb on + strand, within glnAat 3568.550 kb on - strand, within glnAat 3568.564 kb on + strand, within glnAat 3568.574 kb on + strand, within glnAat 3568.574 kb on + strand, within glnAat 3568.620 kb on - strand, within glnAat 3568.677 kb on - strand, within glnAat 3568.703 kb on + strandat 3568.724 kb on + strandat 3568.911 kb on + strand, within DVU3393at 3569.069 kb on - strandat 3569.092 kb on - strandat 3569.102 kb on - strand, within DVU3394at 3569.164 kb on + strand, within DVU3394at 3569.164 kb on + strand, within DVU3394at 3569.212 kb on + strand, within DVU3394at 3569.212 kb on + strand, within DVU3394at 3569.230 kb on - strand, within DVU3394at 3569.232 kb on + strand, within DVU3394at 3569.234 kb on + strand, within DVU3394at 3569.240 kb on - strand, within DVU3394at 3569.283 kb on - strandat 3569.283 kb on - strandat 3569.321 kb on + strandat 3569.321 kb on + strandat 3569.321 kb on + strandat 3569.321 kb on + strandat 3569.321 kb on + strandat 3569.321 kb on + strandat 3569.321 kb on + strandat 3569.321 kb on + strandat 3569.329 kb on - strandat 3569.329 kb on - strandat 3569.329 kb on - strandat 3569.329 kb on - strandat 3569.329 kb on - strandat 3569.369 kb on + strandat 3569.386 kb on - strandat 3569.459 kb on + strandat 3569.488 kb on + strandat 3569.633 kb on + strand, within DVU3395at 3569.646 kb on - strand, within DVU3395at 3569.733 kb on + strand, within DVU3395at 3569.748 kb on + strand, within DVU3395at 3569.764 kb on - strand, within DVU3395at 3569.809 kb on - strand, within DVU3395

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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3,566,546 - DORF24761 0.45 +0.2
3,566,566 + DORF24761 0.47 -1.2
3,566,584 + DORF24761 0.49 -0.6
3,566,597 + DORF24761 0.51 +0.2
3,566,701 + DORF24761 0.63 -0.8
3,566,816 - DORF24761 0.77 +0.2
3,567,026 + +1.0
3,567,034 - +1.1
3,567,041 - -0.3
3,567,161 - -0.5
3,567,187 - +0.2
3,567,201 - -0.2
3,567,219 - -0.1
3,567,233 + -0.9
3,567,247 + -3.2
3,567,313 + -0.2
3,567,398 - +0.4
3,567,404 + -0.8
3,567,450 - +0.2
3,567,541 - -2.3
3,567,854 + glnA DVU3392 0.28 -2.4
3,567,863 - glnA DVU3392 0.29 -2.8
3,567,863 - glnA DVU3392 0.29 -1.2
3,567,913 + glnA DVU3392 0.33 -3.1
3,567,921 - glnA DVU3392 0.33 -2.1
3,567,955 + glnA DVU3392 0.36 -0.9
3,568,060 + glnA DVU3392 0.44 -1.4
3,568,060 + glnA DVU3392 0.44 -2.4
3,568,068 - glnA DVU3392 0.44 -2.1
3,568,112 - glnA DVU3392 0.47 -2.5
3,568,223 + glnA DVU3392 0.56 -2.9
3,568,260 + glnA DVU3392 0.58 -1.9
3,568,265 + glnA DVU3392 0.59 -2.3
3,568,307 + glnA DVU3392 0.62 -2.5
3,568,307 + glnA DVU3392 0.62 -2.8
3,568,425 + glnA DVU3392 0.71 -0.3
3,568,516 - glnA DVU3392 0.78 -2.2
3,568,532 + glnA DVU3392 0.79 -1.1
3,568,537 + glnA DVU3392 0.79 -2.9
3,568,550 - glnA DVU3392 0.80 -0.0
3,568,564 + glnA DVU3392 0.81 -1.2
3,568,574 + glnA DVU3392 0.82 -0.7
3,568,574 + glnA DVU3392 0.82 -2.4
3,568,620 - glnA DVU3392 0.85 -1.3
3,568,677 - glnA DVU3392 0.90 -3.7
3,568,703 + -1.7
3,568,724 + -1.2
3,568,911 + DVU3393 0.24 +0.1
3,569,069 - -0.3
3,569,092 - +0.4
3,569,102 - DVU3394 0.11 -0.3
3,569,164 + DVU3394 0.46 -0.5
3,569,164 + DVU3394 0.46 +0.0
3,569,212 + DVU3394 0.72 +0.4
3,569,212 + DVU3394 0.72 -0.1
3,569,230 - DVU3394 0.82 -0.9
3,569,232 + DVU3394 0.83 -0.8
3,569,234 + DVU3394 0.84 -1.9
3,569,240 - DVU3394 0.88 +0.3
3,569,283 - -0.9
3,569,283 - +0.2
3,569,321 + -0.2
3,569,321 + -0.9
3,569,321 + -0.2
3,569,321 + +0.0
3,569,321 + +0.5
3,569,321 + -0.3
3,569,321 + -0.1
3,569,321 + +0.3
3,569,329 - -0.4
3,569,329 - +0.1
3,569,329 - -0.1
3,569,329 - -0.9
3,569,329 - -0.2
3,569,369 + -2.2
3,569,386 - -0.3
3,569,459 + +0.3
3,569,488 + +0.0
3,569,633 + DVU3395 0.17 -0.3
3,569,646 - DVU3395 0.18 -3.4
3,569,733 + DVU3395 0.25 -0.0
3,569,748 + DVU3395 0.26 -0.2
3,569,764 - DVU3395 0.27 -0.6
3,569,809 - DVU3395 0.31 -1.2

Or see this region's nucleotide sequence