Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DORF24761 and glnA are separated by 458 nucleotides glnA and DVU3393 are separated by 39 nucleotides DVU3393 and DVU3394 are separated by 0 nucleotides DVU3394 and DVU3395 are separated by 142 nucleotides
DORF24761: DORF24761 - SEED: FIG00604061: hypothetical protein, at 3,566,161 to 3,567,015
DORF24761
DVU3392: glnA - glutamine synthetase, type I (TIGR), at 3,567,474 to 3,568,817
glnA
DVU3393: DVU3393 - hypothetical protein (TIGR), at 3,568,857 to 3,569,081
DVU3393
DVU3394: DVU3394 - hypothetical protein (TIGR), at 3,569,082 to 3,569,261
DVU3394
DVU3395: DVU3395 - peptidase, M23/M37 family (TIGR), at 3,569,404 to 3,570,714
DVU3395
Position (kb)
3567
3568
3569 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3566.546 kb on - strand, within DORF24761 at 3566.566 kb on + strand, within DORF24761 at 3566.584 kb on + strand, within DORF24761 at 3566.597 kb on + strand, within DORF24761 at 3566.701 kb on + strand, within DORF24761 at 3566.816 kb on - strand, within DORF24761 at 3567.026 kb on + strand at 3567.034 kb on - strand at 3567.041 kb on - strand at 3567.161 kb on - strand at 3567.187 kb on - strand at 3567.201 kb on - strand at 3567.219 kb on - strand at 3567.233 kb on + strand at 3567.247 kb on + strand at 3567.313 kb on + strand at 3567.398 kb on - strand at 3567.404 kb on + strand at 3567.450 kb on - strand at 3567.541 kb on - strand at 3567.854 kb on + strand, within glnA at 3567.863 kb on - strand, within glnA at 3567.863 kb on - strand, within glnA at 3567.913 kb on + strand, within glnA at 3567.921 kb on - strand, within glnA at 3567.955 kb on + strand, within glnA at 3568.060 kb on + strand, within glnA at 3568.060 kb on + strand, within glnA at 3568.068 kb on - strand, within glnA at 3568.112 kb on - strand, within glnA at 3568.223 kb on + strand, within glnA at 3568.260 kb on + strand, within glnA at 3568.265 kb on + strand, within glnA at 3568.307 kb on + strand, within glnA at 3568.307 kb on + strand, within glnA at 3568.425 kb on + strand, within glnA at 3568.516 kb on - strand, within glnA at 3568.532 kb on + strand, within glnA at 3568.537 kb on + strand, within glnA at 3568.550 kb on - strand, within glnA at 3568.564 kb on + strand, within glnA at 3568.574 kb on + strand, within glnA at 3568.574 kb on + strand, within glnA at 3568.620 kb on - strand, within glnA at 3568.677 kb on - strand, within glnA at 3568.703 kb on + strand at 3568.724 kb on + strand at 3568.911 kb on + strand, within DVU3393 at 3569.069 kb on - strand at 3569.092 kb on - strand at 3569.102 kb on - strand, within DVU3394 at 3569.164 kb on + strand, within DVU3394 at 3569.164 kb on + strand, within DVU3394 at 3569.212 kb on + strand, within DVU3394 at 3569.212 kb on + strand, within DVU3394 at 3569.230 kb on - strand, within DVU3394 at 3569.232 kb on + strand, within DVU3394 at 3569.234 kb on + strand, within DVU3394 at 3569.240 kb on - strand, within DVU3394 at 3569.283 kb on - strand at 3569.283 kb on - strand at 3569.321 kb on + strand at 3569.321 kb on + strand at 3569.321 kb on + strand at 3569.321 kb on + strand at 3569.321 kb on + strand at 3569.321 kb on + strand at 3569.321 kb on + strand at 3569.321 kb on + strand at 3569.329 kb on - strand at 3569.329 kb on - strand at 3569.329 kb on - strand at 3569.329 kb on - strand at 3569.329 kb on - strand at 3569.369 kb on + strand at 3569.386 kb on - strand at 3569.459 kb on + strand at 3569.488 kb on + strand at 3569.633 kb on + strand, within DVU3395 at 3569.646 kb on - strand, within DVU3395 at 3569.733 kb on + strand, within DVU3395 at 3569.748 kb on + strand, within DVU3395 at 3569.764 kb on - strand, within DVU3395 at 3569.809 kb on - strand, within DVU3395
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM remove 3,566,546 - DORF24761 0.45 +0.2 3,566,566 + DORF24761 0.47 -1.2 3,566,584 + DORF24761 0.49 -0.6 3,566,597 + DORF24761 0.51 +0.2 3,566,701 + DORF24761 0.63 -0.8 3,566,816 - DORF24761 0.77 +0.2 3,567,026 + +1.0 3,567,034 - +1.1 3,567,041 - -0.3 3,567,161 - -0.5 3,567,187 - +0.2 3,567,201 - -0.2 3,567,219 - -0.1 3,567,233 + -0.9 3,567,247 + -3.2 3,567,313 + -0.2 3,567,398 - +0.4 3,567,404 + -0.8 3,567,450 - +0.2 3,567,541 - -2.3 3,567,854 + glnA DVU3392 0.28 -2.4 3,567,863 - glnA DVU3392 0.29 -2.8 3,567,863 - glnA DVU3392 0.29 -1.2 3,567,913 + glnA DVU3392 0.33 -3.1 3,567,921 - glnA DVU3392 0.33 -2.1 3,567,955 + glnA DVU3392 0.36 -0.9 3,568,060 + glnA DVU3392 0.44 -1.4 3,568,060 + glnA DVU3392 0.44 -2.4 3,568,068 - glnA DVU3392 0.44 -2.1 3,568,112 - glnA DVU3392 0.47 -2.5 3,568,223 + glnA DVU3392 0.56 -2.9 3,568,260 + glnA DVU3392 0.58 -1.9 3,568,265 + glnA DVU3392 0.59 -2.3 3,568,307 + glnA DVU3392 0.62 -2.5 3,568,307 + glnA DVU3392 0.62 -2.8 3,568,425 + glnA DVU3392 0.71 -0.3 3,568,516 - glnA DVU3392 0.78 -2.2 3,568,532 + glnA DVU3392 0.79 -1.1 3,568,537 + glnA DVU3392 0.79 -2.9 3,568,550 - glnA DVU3392 0.80 -0.0 3,568,564 + glnA DVU3392 0.81 -1.2 3,568,574 + glnA DVU3392 0.82 -0.7 3,568,574 + glnA DVU3392 0.82 -2.4 3,568,620 - glnA DVU3392 0.85 -1.3 3,568,677 - glnA DVU3392 0.90 -3.7 3,568,703 + -1.7 3,568,724 + -1.2 3,568,911 + DVU3393 0.24 +0.1 3,569,069 - -0.3 3,569,092 - +0.4 3,569,102 - DVU3394 0.11 -0.3 3,569,164 + DVU3394 0.46 -0.5 3,569,164 + DVU3394 0.46 +0.0 3,569,212 + DVU3394 0.72 +0.4 3,569,212 + DVU3394 0.72 -0.1 3,569,230 - DVU3394 0.82 -0.9 3,569,232 + DVU3394 0.83 -0.8 3,569,234 + DVU3394 0.84 -1.9 3,569,240 - DVU3394 0.88 +0.3 3,569,283 - -0.9 3,569,283 - +0.2 3,569,321 + -0.2 3,569,321 + -0.9 3,569,321 + -0.2 3,569,321 + +0.0 3,569,321 + +0.5 3,569,321 + -0.3 3,569,321 + -0.1 3,569,321 + +0.3 3,569,329 - -0.4 3,569,329 - +0.1 3,569,329 - -0.1 3,569,329 - -0.9 3,569,329 - -0.2 3,569,369 + -2.2 3,569,386 - -0.3 3,569,459 + +0.3 3,569,488 + +0.0 3,569,633 + DVU3395 0.17 -0.3 3,569,646 - DVU3395 0.18 -3.4 3,569,733 + DVU3395 0.25 -0.0 3,569,748 + DVU3395 0.26 -0.2 3,569,764 - DVU3395 0.27 -0.6 3,569,809 - DVU3395 0.31 -1.2
Or see this region's nucleotide sequence