Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3314

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU3313 and DORF47110 are separated by 93 nucleotidesDORF47110 and DVU3314 are separated by 329 nucleotidesDVU3314 and pyrK are separated by 380 nucleotides DVU3313: DVU3313 - transcriptional regulator, LysR family (TIGR), at 3,489,178 to 3,490,068 DVU3313 DORF47110: DORF47110 - no description, at 3,490,162 to 3,490,410 DORF47110 DVU3314: DVU3314 - peptidase, U32 family (TIGR), at 3,490,740 to 3,492,716 DVU3314 DVU3315: pyrK - dihydroorotate dehydrogenase, electron transfer subunit (TIGR), at 3,493,097 to 3,493,915 pyrK Position (kb) 3490 3491 3492 3493Strain fitness (log2 ratio) -3 -2 -1 0 1at 3489.808 kb on - strand, within DVU3313at 3489.818 kb on - strand, within DVU3313at 3489.829 kb on + strand, within DVU3313at 3489.837 kb on - strand, within DVU3313at 3489.840 kb on + strand, within DVU3313at 3489.840 kb on + strand, within DVU3313at 3489.848 kb on - strand, within DVU3313at 3489.848 kb on - strand, within DVU3313at 3489.870 kb on - strand, within DVU3313at 3489.998 kb on - strandat 3489.998 kb on - strandat 3490.025 kb on + strandat 3490.126 kb on - strandat 3490.149 kb on - strandat 3490.152 kb on + strandat 3490.152 kb on + strandat 3490.187 kb on + strand, within DORF47110at 3490.195 kb on - strand, within DORF47110at 3490.207 kb on - strand, within DORF47110at 3490.370 kb on - strand, within DORF47110at 3490.370 kb on - strand, within DORF47110at 3490.470 kb on - strandat 3490.481 kb on - strandat 3490.495 kb on + strandat 3490.495 kb on + strandat 3490.495 kb on + strandat 3490.503 kb on - strandat 3490.503 kb on - strandat 3490.503 kb on - strandat 3490.601 kb on + strandat 3490.650 kb on - strandat 3490.703 kb on + strandat 3490.831 kb on - strandat 3490.910 kb on - strandat 3490.921 kb on + strandat 3490.921 kb on + strandat 3491.239 kb on + strand, within DVU3314at 3491.298 kb on - strand, within DVU3314at 3491.331 kb on - strand, within DVU3314at 3491.331 kb on - strand, within DVU3314at 3491.346 kb on + strand, within DVU3314at 3491.438 kb on - strand, within DVU3314at 3491.470 kb on - strand, within DVU3314at 3491.505 kb on - strand, within DVU3314at 3491.588 kb on + strand, within DVU3314at 3491.666 kb on + strand, within DVU3314at 3492.122 kb on + strand, within DVU3314at 3492.193 kb on + strand, within DVU3314at 3492.201 kb on - strand, within DVU3314at 3492.316 kb on + strand, within DVU3314at 3492.379 kb on + strand, within DVU3314at 3492.379 kb on + strand, within DVU3314at 3492.387 kb on - strand, within DVU3314at 3492.413 kb on + strand, within DVU3314at 3492.519 kb on - strandat 3492.552 kb on - strandat 3492.765 kb on + strandat 3492.896 kb on + strandat 3492.984 kb on - strandat 3493.009 kb on + strandat 3493.017 kb on - strandat 3493.033 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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3,489,808 - DVU3313 0.71 +0.2
3,489,818 - DVU3313 0.72 -0.0
3,489,829 + DVU3313 0.73 -0.0
3,489,837 - DVU3313 0.74 -0.2
3,489,840 + DVU3313 0.74 +0.1
3,489,840 + DVU3313 0.74 +1.1
3,489,848 - DVU3313 0.75 -0.2
3,489,848 - DVU3313 0.75 +1.3
3,489,870 - DVU3313 0.78 +0.4
3,489,998 - +0.1
3,489,998 - +0.0
3,490,025 + -0.2
3,490,126 - +0.1
3,490,149 - -0.2
3,490,152 + -0.2
3,490,152 + +0.0
3,490,187 + DORF47110 0.10 -0.5
3,490,195 - DORF47110 0.13 +0.3
3,490,207 - DORF47110 0.18 -3.1
3,490,370 - DORF47110 0.84 +0.7
3,490,370 - DORF47110 0.84 -0.1
3,490,470 - -0.3
3,490,481 - +0.1
3,490,495 + -0.0
3,490,495 + -0.8
3,490,495 + +0.1
3,490,503 - -0.7
3,490,503 - +0.3
3,490,503 - -0.2
3,490,601 + -0.3
3,490,650 - +0.0
3,490,703 + +0.5
3,490,831 - -0.4
3,490,910 - -0.7
3,490,921 + +0.8
3,490,921 + -0.2
3,491,239 + DVU3314 0.25 +1.7
3,491,298 - DVU3314 0.28 +0.4
3,491,331 - DVU3314 0.30 -0.8
3,491,331 - DVU3314 0.30 -1.3
3,491,346 + DVU3314 0.31 -1.0
3,491,438 - DVU3314 0.35 -0.8
3,491,470 - DVU3314 0.37 +1.0
3,491,505 - DVU3314 0.39 -0.3
3,491,588 + DVU3314 0.43 -1.2
3,491,666 + DVU3314 0.47 -0.3
3,492,122 + DVU3314 0.70 -0.3
3,492,193 + DVU3314 0.73 -0.0
3,492,201 - DVU3314 0.74 +0.7
3,492,316 + DVU3314 0.80 -1.2
3,492,379 + DVU3314 0.83 -1.0
3,492,379 + DVU3314 0.83 -1.6
3,492,387 - DVU3314 0.83 -0.0
3,492,413 + DVU3314 0.85 -1.1
3,492,519 - -1.5
3,492,552 - -1.3
3,492,765 + -0.4
3,492,896 + -0.7
3,492,984 - +0.4
3,493,009 + -3.5
3,493,017 - -0.0
3,493,033 + +0.6

Or see this region's nucleotide sequence