Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU3293 and areC are separated by 17 nucleotides areC and DVU3295 are separated by 287 nucleotides
DVU3293: DVU3293 - thiamine pyrophosphate-requiring enzyme (TIGR), at 3,469,747 to 3,471,390
DVU3293
DVU3294: areC - aldehyde dehydrogenase (NADP) family protein (TIGR), at 3,471,408 to 3,472,802
areC
DVU3295: DVU3295 - hemolysin III (TIGR), at 3,473,090 to 3,473,737
DVU3295
Position (kb)
3471
3472
3473 Strain fitness (log2 ratio)
-2
-1
0
1 at 3470.424 kb on - strand, within DVU3293 at 3470.486 kb on + strand, within DVU3293 at 3470.512 kb on - strand, within DVU3293 at 3470.590 kb on - strand, within DVU3293 at 3470.619 kb on + strand, within DVU3293 at 3470.627 kb on + strand, within DVU3293 at 3470.657 kb on - strand, within DVU3293 at 3470.664 kb on + strand, within DVU3293 at 3470.672 kb on - strand, within DVU3293 at 3470.781 kb on + strand, within DVU3293 at 3470.799 kb on + strand, within DVU3293 at 3470.819 kb on + strand, within DVU3293 at 3470.821 kb on + strand, within DVU3293 at 3470.821 kb on + strand, within DVU3293 at 3470.821 kb on + strand, within DVU3293 at 3470.821 kb on + strand, within DVU3293 at 3470.829 kb on - strand, within DVU3293 at 3470.829 kb on - strand, within DVU3293 at 3470.829 kb on - strand, within DVU3293 at 3470.842 kb on - strand, within DVU3293 at 3470.844 kb on + strand, within DVU3293 at 3470.898 kb on + strand, within DVU3293 at 3470.946 kb on + strand, within DVU3293 at 3470.949 kb on + strand, within DVU3293 at 3471.009 kb on - strand, within DVU3293 at 3471.101 kb on + strand, within DVU3293 at 3471.154 kb on - strand, within DVU3293 at 3471.198 kb on + strand, within DVU3293 at 3471.198 kb on + strand, within DVU3293 at 3471.217 kb on + strand, within DVU3293 at 3471.232 kb on - strand at 3471.275 kb on - strand at 3471.275 kb on - strand at 3471.277 kb on - strand at 3471.335 kb on - strand at 3471.415 kb on + strand at 3471.423 kb on - strand at 3471.423 kb on - strand at 3471.432 kb on + strand at 3471.462 kb on + strand at 3471.485 kb on - strand at 3471.513 kb on + strand at 3471.552 kb on - strand, within areC at 3471.598 kb on + strand, within areC at 3471.686 kb on + strand, within areC at 3471.793 kb on + strand, within areC at 3471.793 kb on + strand, within areC at 3471.793 kb on + strand, within areC at 3471.801 kb on - strand, within areC at 3471.874 kb on + strand, within areC at 3471.884 kb on + strand, within areC at 3471.884 kb on + strand, within areC at 3471.889 kb on + strand, within areC at 3471.892 kb on - strand, within areC at 3471.892 kb on - strand, within areC at 3471.904 kb on + strand, within areC at 3471.943 kb on + strand, within areC at 3471.951 kb on - strand, within areC at 3471.951 kb on - strand, within areC at 3471.972 kb on + strand, within areC at 3472.085 kb on - strand, within areC at 3472.097 kb on - strand, within areC at 3472.114 kb on - strand, within areC at 3472.292 kb on + strand, within areC at 3472.292 kb on + strand, within areC at 3472.324 kb on - strand, within areC at 3472.326 kb on - strand, within areC at 3472.352 kb on + strand, within areC at 3472.373 kb on + strand, within areC at 3472.407 kb on - strand, within areC at 3472.412 kb on - strand, within areC at 3472.435 kb on + strand, within areC at 3472.442 kb on - strand, within areC at 3472.443 kb on - strand, within areC at 3472.456 kb on + strand, within areC at 3472.474 kb on + strand, within areC at 3472.475 kb on - strand, within areC at 3472.556 kb on + strand, within areC at 3472.577 kb on - strand, within areC at 3472.601 kb on + strand, within areC at 3472.603 kb on + strand, within areC at 3472.608 kb on + strand, within areC at 3472.608 kb on + strand, within areC at 3472.611 kb on - strand, within areC at 3472.611 kb on - strand, within areC at 3472.614 kb on + strand, within areC at 3472.622 kb on - strand, within areC at 3472.701 kb on - strand at 3472.796 kb on + strand at 3472.829 kb on - strand at 3472.834 kb on - strand at 3472.842 kb on + strand at 3472.842 kb on + strand at 3472.850 kb on - strand at 3472.850 kb on - strand at 3472.857 kb on + strand at 3472.874 kb on + strand at 3472.875 kb on - strand at 3472.906 kb on - strand at 3472.914 kb on + strand at 3472.914 kb on + strand at 3472.935 kb on - strand at 3472.953 kb on + strand at 3472.966 kb on - strand at 3472.975 kb on - strand at 3473.029 kb on - strand at 3473.041 kb on - strand at 3473.095 kb on - strand at 3473.372 kb on + strand, within DVU3295 at 3473.414 kb on + strand, within DVU3295 at 3473.571 kb on + strand, within DVU3295 at 3473.576 kb on + strand, within DVU3295 at 3473.582 kb on + strand, within DVU3295 at 3473.664 kb on + strand, within DVU3295 at 3473.664 kb on + strand, within DVU3295 at 3473.672 kb on - strand, within DVU3295 at 3473.792 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM remove 3,470,424 - DVU3293 0.41 -0.1 3,470,486 + DVU3293 0.45 -0.5 3,470,512 - DVU3293 0.47 +0.0 3,470,590 - DVU3293 0.51 -0.3 3,470,619 + DVU3293 0.53 -1.3 3,470,627 + DVU3293 0.54 -0.5 3,470,657 - DVU3293 0.55 -1.9 3,470,664 + DVU3293 0.56 +0.0 3,470,672 - DVU3293 0.56 -0.4 3,470,781 + DVU3293 0.63 -0.3 3,470,799 + DVU3293 0.64 -0.3 3,470,819 + DVU3293 0.65 +0.0 3,470,821 + DVU3293 0.65 -0.1 3,470,821 + DVU3293 0.65 +0.1 3,470,821 + DVU3293 0.65 -0.1 3,470,821 + DVU3293 0.65 +0.4 3,470,829 - DVU3293 0.66 +0.5 3,470,829 - DVU3293 0.66 -0.4 3,470,829 - DVU3293 0.66 +0.1 3,470,842 - DVU3293 0.67 +1.1 3,470,844 + DVU3293 0.67 -0.0 3,470,898 + DVU3293 0.70 -0.8 3,470,946 + DVU3293 0.73 -1.2 3,470,949 + DVU3293 0.73 -0.7 3,471,009 - DVU3293 0.77 +0.1 3,471,101 + DVU3293 0.82 +0.3 3,471,154 - DVU3293 0.86 -0.1 3,471,198 + DVU3293 0.88 -0.9 3,471,198 + DVU3293 0.88 +0.2 3,471,217 + DVU3293 0.89 +0.0 3,471,232 - -0.1 3,471,275 - -0.0 3,471,275 - -0.1 3,471,277 - -1.6 3,471,335 - -0.0 3,471,415 + +0.0 3,471,423 - +0.1 3,471,423 - -0.2 3,471,432 + +0.3 3,471,462 + -0.6 3,471,485 - -0.3 3,471,513 + -0.6 3,471,552 - areC DVU3294 0.10 -0.2 3,471,598 + areC DVU3294 0.14 +0.3 3,471,686 + areC DVU3294 0.20 -1.0 3,471,793 + areC DVU3294 0.28 +1.7 3,471,793 + areC DVU3294 0.28 +0.1 3,471,793 + areC DVU3294 0.28 -0.5 3,471,801 - areC DVU3294 0.28 +0.3 3,471,874 + areC DVU3294 0.33 -1.6 3,471,884 + areC DVU3294 0.34 +0.2 3,471,884 + areC DVU3294 0.34 +0.6 3,471,889 + areC DVU3294 0.34 +0.2 3,471,892 - areC DVU3294 0.35 +0.6 3,471,892 - areC DVU3294 0.35 +0.1 3,471,904 + areC DVU3294 0.36 +0.8 3,471,943 + areC DVU3294 0.38 +0.4 3,471,951 - areC DVU3294 0.39 -0.2 3,471,951 - areC DVU3294 0.39 -0.3 3,471,972 + areC DVU3294 0.40 -0.1 3,472,085 - areC DVU3294 0.49 -0.5 3,472,097 - areC DVU3294 0.49 +0.4 3,472,114 - areC DVU3294 0.51 +0.8 3,472,292 + areC DVU3294 0.63 +0.4 3,472,292 + areC DVU3294 0.63 -0.3 3,472,324 - areC DVU3294 0.66 +1.4 3,472,326 - areC DVU3294 0.66 -0.7 3,472,352 + areC DVU3294 0.68 +0.3 3,472,373 + areC DVU3294 0.69 -0.1 3,472,407 - areC DVU3294 0.72 +0.2 3,472,412 - areC DVU3294 0.72 -0.3 3,472,435 + areC DVU3294 0.74 +0.3 3,472,442 - areC DVU3294 0.74 -0.7 3,472,443 - areC DVU3294 0.74 +0.9 3,472,456 + areC DVU3294 0.75 +0.2 3,472,474 + areC DVU3294 0.76 -0.3 3,472,475 - areC DVU3294 0.76 -0.1 3,472,556 + areC DVU3294 0.82 +0.9 3,472,577 - areC DVU3294 0.84 -0.3 3,472,601 + areC DVU3294 0.86 +0.2 3,472,603 + areC DVU3294 0.86 +0.1 3,472,608 + areC DVU3294 0.86 -1.1 3,472,608 + areC DVU3294 0.86 +0.0 3,472,611 - areC DVU3294 0.86 +0.6 3,472,611 - areC DVU3294 0.86 +0.2 3,472,614 + areC DVU3294 0.86 +0.5 3,472,622 - areC DVU3294 0.87 -0.7 3,472,701 - -0.9 3,472,796 + -0.4 3,472,829 - -0.3 3,472,834 - +0.1 3,472,842 + -1.9 3,472,842 + -0.0 3,472,850 - +0.2 3,472,850 - +0.7 3,472,857 + +0.3 3,472,874 + -0.7 3,472,875 - +0.5 3,472,906 - -0.8 3,472,914 + -0.2 3,472,914 + +0.7 3,472,935 - -0.1 3,472,953 + +0.1 3,472,966 - -1.2 3,472,975 - +0.2 3,473,029 - -0.2 3,473,041 - +0.2 3,473,095 - +1.7 3,473,372 + DVU3295 0.44 -0.4 3,473,414 + DVU3295 0.50 -0.9 3,473,571 + DVU3295 0.74 -0.4 3,473,576 + DVU3295 0.75 +0.3 3,473,582 + DVU3295 0.76 +1.1 3,473,664 + DVU3295 0.89 +0.7 3,473,664 + DVU3295 0.89 +0.4 3,473,672 - DVU3295 0.90 -0.9 3,473,792 + -0.1
Or see this region's nucleotide sequence