Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3277

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU3274 and DVU3275 overlap by 4 nucleotidesDVU3275 and DVU3276 are separated by 113 nucleotidesDVU3276 and DVU3277 are separated by 82 nucleotidesDVU3277 and htrA are separated by 0 nucleotides DVU3274: DVU3274 - hypothetical protein (TIGR), at 3,451,228 to 3,451,896 DVU3274 DVU3275: DVU3275 - hypothetical protein (TIGR), at 3,451,893 to 3,452,033 DVU3275 DVU3276: DVU3276 - ferredoxin I (TIGR), at 3,452,147 to 3,452,335 DVU3276 DVU3277: DVU3277 - hypothetical protein (TIGR), at 3,452,418 to 3,452,516 DVU3277 DVU3278: htrA - peptidase/PDZ domain protein (TIGR), at 3,452,517 to 3,454,073 htrA Position (kb) 3452 3453Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3452.052 kb on - strandat 3452.067 kb on + strandat 3452.442 kb on + strand, within DVU3277at 3452.449 kb on - strand, within DVU3277at 3452.508 kb on - strandat 3452.589 kb on - strandat 3452.618 kb on + strandat 3452.642 kb on + strandat 3452.665 kb on - strandat 3452.721 kb on - strand, within htrAat 3452.752 kb on + strand, within htrAat 3452.752 kb on + strand, within htrAat 3452.752 kb on + strand, within htrAat 3452.752 kb on + strand, within htrAat 3452.760 kb on - strand, within htrAat 3452.779 kb on + strand, within htrAat 3452.787 kb on - strand, within htrAat 3452.869 kb on + strand, within htrAat 3452.912 kb on + strand, within htrAat 3452.956 kb on - strand, within htrAat 3452.980 kb on + strand, within htrAat 3452.988 kb on - strand, within htrAat 3452.995 kb on - strand, within htrAat 3453.087 kb on - strand, within htrAat 3453.087 kb on - strand, within htrAat 3453.087 kb on - strand, within htrAat 3453.087 kb on - strand, within htrAat 3453.173 kb on - strand, within htrAat 3453.188 kb on - strand, within htrAat 3453.257 kb on + strand, within htrAat 3453.261 kb on - strand, within htrAat 3453.282 kb on - strand, within htrAat 3453.324 kb on + strand, within htrAat 3453.446 kb on - strand, within htrAat 3453.461 kb on - strand, within htrA

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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3,452,052 - +0.4
3,452,067 + -0.4
3,452,442 + DVU3277 0.24 -1.0
3,452,449 - DVU3277 0.31 -1.4
3,452,508 - +0.1
3,452,589 - -0.2
3,452,618 + +0.2
3,452,642 + -0.2
3,452,665 - +0.0
3,452,721 - htrA DVU3278 0.13 +0.9
3,452,752 + htrA DVU3278 0.15 -0.1
3,452,752 + htrA DVU3278 0.15 +1.5
3,452,752 + htrA DVU3278 0.15 -0.2
3,452,752 + htrA DVU3278 0.15 -0.0
3,452,760 - htrA DVU3278 0.16 +0.7
3,452,779 + htrA DVU3278 0.17 -0.0
3,452,787 - htrA DVU3278 0.17 +0.3
3,452,869 + htrA DVU3278 0.23 +1.4
3,452,912 + htrA DVU3278 0.25 +0.4
3,452,956 - htrA DVU3278 0.28 +0.1
3,452,980 + htrA DVU3278 0.30 -0.7
3,452,988 - htrA DVU3278 0.30 +0.3
3,452,995 - htrA DVU3278 0.31 -0.8
3,453,087 - htrA DVU3278 0.37 +0.5
3,453,087 - htrA DVU3278 0.37 -0.9
3,453,087 - htrA DVU3278 0.37 +0.1
3,453,087 - htrA DVU3278 0.37 -1.1
3,453,173 - htrA DVU3278 0.42 +0.3
3,453,188 - htrA DVU3278 0.43 -0.4
3,453,257 + htrA DVU3278 0.48 +1.9
3,453,261 - htrA DVU3278 0.48 +0.2
3,453,282 - htrA DVU3278 0.49 -0.3
3,453,324 + htrA DVU3278 0.52 -0.6
3,453,446 - htrA DVU3278 0.60 +1.4
3,453,461 - htrA DVU3278 0.61 -2.8

Or see this region's nucleotide sequence