Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU3251 and DVU3252 are separated by 10 nucleotides DVU3252 and DVU3253 are separated by 87 nucleotides DVU3253 and DVU3254 overlap by 10 nucleotides
DVU3251: DVU3251 - nitrite transporter, HPP family (from data) , at 3,424,152 to 3,424,691
DVU3251
DVU3252: DVU3252 - hypothetical protein (TIGR), at 3,424,702 to 3,424,953
DVU3252
DVU3253: DVU3253 - phenylacetate-coenzyme A ligase, putative (TIGR), at 3,425,041 to 3,426,306
DVU3253
DVU3254: DVU3254 - PDZ domain protein (TIGR), at 3,426,297 to 3,427,661
DVU3254
Position (kb)
3425
3426
3427 Strain fitness (log2 ratio)
-2
-1
0
1 at 3424.078 kb on - strand at 3424.174 kb on + strand at 3424.182 kb on - strand at 3424.277 kb on + strand, within DVU3251 at 3424.277 kb on - strand, within DVU3251 at 3424.315 kb on + strand, within DVU3251 at 3424.323 kb on + strand, within DVU3251 at 3424.382 kb on - strand, within DVU3251 at 3424.436 kb on - strand, within DVU3251 at 3424.478 kb on - strand, within DVU3251 at 3424.480 kb on - strand, within DVU3251 at 3424.503 kb on - strand, within DVU3251 at 3424.503 kb on - strand, within DVU3251 at 3424.503 kb on - strand, within DVU3251 at 3424.565 kb on - strand, within DVU3251 at 3424.565 kb on - strand, within DVU3251 at 3424.657 kb on - strand at 3424.692 kb on + strand at 3424.692 kb on + strand at 3424.723 kb on - strand at 3425.025 kb on + strand at 3426.053 kb on - strand, within DVU3253 at 3426.076 kb on - strand, within DVU3253 at 3426.099 kb on + strand, within DVU3253 at 3426.319 kb on + strand at 3426.399 kb on - strand at 3426.440 kb on + strand, within DVU3254 at 3426.563 kb on + strand, within DVU3254 at 3426.639 kb on + strand, within DVU3254 at 3426.722 kb on + strand, within DVU3254 at 3426.730 kb on - strand, within DVU3254 at 3426.820 kb on + strand, within DVU3254 at 3426.828 kb on - strand, within DVU3254 at 3426.828 kb on - strand, within DVU3254 at 3427.040 kb on + strand, within DVU3254 at 3427.118 kb on - strand, within DVU3254 at 3427.150 kb on + strand, within DVU3254 at 3427.198 kb on - strand, within DVU3254 at 3427.229 kb on + strand, within DVU3254 at 3427.230 kb on + strand, within DVU3254 at 3427.237 kb on - strand, within DVU3254
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM remove 3,424,078 - -0.5 3,424,174 + +0.7 3,424,182 - +0.0 3,424,277 + DVU3251 0.23 +0.9 3,424,277 - DVU3251 0.23 -0.5 3,424,315 + DVU3251 0.30 -0.2 3,424,323 + DVU3251 0.32 -0.0 3,424,382 - DVU3251 0.43 -0.4 3,424,436 - DVU3251 0.53 -0.3 3,424,478 - DVU3251 0.60 -0.8 3,424,480 - DVU3251 0.61 -0.1 3,424,503 - DVU3251 0.65 +0.0 3,424,503 - DVU3251 0.65 -0.8 3,424,503 - DVU3251 0.65 -0.0 3,424,565 - DVU3251 0.76 +0.1 3,424,565 - DVU3251 0.76 -2.0 3,424,657 - -0.3 3,424,692 + -0.0 3,424,692 + -0.3 3,424,723 - -0.7 3,425,025 + -0.7 3,426,053 - DVU3253 0.80 -0.0 3,426,076 - DVU3253 0.82 -1.1 3,426,099 + DVU3253 0.84 -2.1 3,426,319 + -0.0 3,426,399 - +0.7 3,426,440 + DVU3254 0.10 +0.4 3,426,563 + DVU3254 0.19 -0.0 3,426,639 + DVU3254 0.25 -0.1 3,426,722 + DVU3254 0.31 +0.4 3,426,730 - DVU3254 0.32 -0.2 3,426,820 + DVU3254 0.38 +0.4 3,426,828 - DVU3254 0.39 +0.6 3,426,828 - DVU3254 0.39 +0.3 3,427,040 + DVU3254 0.54 +0.6 3,427,118 - DVU3254 0.60 -0.0 3,427,150 + DVU3254 0.62 +0.3 3,427,198 - DVU3254 0.66 +1.4 3,427,229 + DVU3254 0.68 +0.3 3,427,230 + DVU3254 0.68 +0.3 3,427,237 - DVU3254 0.69 +0.5
Or see this region's nucleotide sequence