Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3253

Experiment: Pyruvate-Sulfite (60-20mM) with Molybdate 100uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU3251 and DVU3252 are separated by 10 nucleotidesDVU3252 and DVU3253 are separated by 87 nucleotidesDVU3253 and DVU3254 overlap by 10 nucleotides DVU3251: DVU3251 - nitrite transporter, HPP family (from data), at 3,424,152 to 3,424,691 DVU3251 DVU3252: DVU3252 - hypothetical protein (TIGR), at 3,424,702 to 3,424,953 DVU3252 DVU3253: DVU3253 - phenylacetate-coenzyme A ligase, putative (TIGR), at 3,425,041 to 3,426,306 DVU3253 DVU3254: DVU3254 - PDZ domain protein (TIGR), at 3,426,297 to 3,427,661 DVU3254 Position (kb) 3425 3426 3427Strain fitness (log2 ratio) -2 -1 0 1at 3424.078 kb on - strandat 3424.174 kb on + strandat 3424.182 kb on - strandat 3424.277 kb on + strand, within DVU3251at 3424.277 kb on - strand, within DVU3251at 3424.315 kb on + strand, within DVU3251at 3424.323 kb on + strand, within DVU3251at 3424.382 kb on - strand, within DVU3251at 3424.436 kb on - strand, within DVU3251at 3424.478 kb on - strand, within DVU3251at 3424.480 kb on - strand, within DVU3251at 3424.503 kb on - strand, within DVU3251at 3424.503 kb on - strand, within DVU3251at 3424.503 kb on - strand, within DVU3251at 3424.565 kb on - strand, within DVU3251at 3424.565 kb on - strand, within DVU3251at 3424.657 kb on - strandat 3424.692 kb on + strandat 3424.692 kb on + strandat 3424.723 kb on - strandat 3425.025 kb on + strandat 3426.053 kb on - strand, within DVU3253at 3426.076 kb on - strand, within DVU3253at 3426.099 kb on + strand, within DVU3253at 3426.319 kb on + strandat 3426.399 kb on - strandat 3426.440 kb on + strand, within DVU3254at 3426.563 kb on + strand, within DVU3254at 3426.639 kb on + strand, within DVU3254at 3426.722 kb on + strand, within DVU3254at 3426.730 kb on - strand, within DVU3254at 3426.820 kb on + strand, within DVU3254at 3426.828 kb on - strand, within DVU3254at 3426.828 kb on - strand, within DVU3254at 3427.040 kb on + strand, within DVU3254at 3427.118 kb on - strand, within DVU3254at 3427.150 kb on + strand, within DVU3254at 3427.198 kb on - strand, within DVU3254at 3427.229 kb on + strand, within DVU3254at 3427.230 kb on + strand, within DVU3254at 3427.237 kb on - strand, within DVU3254

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Molybdate 100uM
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3,424,078 - -0.5
3,424,174 + +0.7
3,424,182 - +0.0
3,424,277 + DVU3251 0.23 +0.9
3,424,277 - DVU3251 0.23 -0.5
3,424,315 + DVU3251 0.30 -0.2
3,424,323 + DVU3251 0.32 -0.0
3,424,382 - DVU3251 0.43 -0.4
3,424,436 - DVU3251 0.53 -0.3
3,424,478 - DVU3251 0.60 -0.8
3,424,480 - DVU3251 0.61 -0.1
3,424,503 - DVU3251 0.65 +0.0
3,424,503 - DVU3251 0.65 -0.8
3,424,503 - DVU3251 0.65 -0.0
3,424,565 - DVU3251 0.76 +0.1
3,424,565 - DVU3251 0.76 -2.0
3,424,657 - -0.3
3,424,692 + -0.0
3,424,692 + -0.3
3,424,723 - -0.7
3,425,025 + -0.7
3,426,053 - DVU3253 0.80 -0.0
3,426,076 - DVU3253 0.82 -1.1
3,426,099 + DVU3253 0.84 -2.1
3,426,319 + -0.0
3,426,399 - +0.7
3,426,440 + DVU3254 0.10 +0.4
3,426,563 + DVU3254 0.19 -0.0
3,426,639 + DVU3254 0.25 -0.1
3,426,722 + DVU3254 0.31 +0.4
3,426,730 - DVU3254 0.32 -0.2
3,426,820 + DVU3254 0.38 +0.4
3,426,828 - DVU3254 0.39 +0.6
3,426,828 - DVU3254 0.39 +0.3
3,427,040 + DVU3254 0.54 +0.6
3,427,118 - DVU3254 0.60 -0.0
3,427,150 + DVU3254 0.62 +0.3
3,427,198 - DVU3254 0.66 +1.4
3,427,229 + DVU3254 0.68 +0.3
3,427,230 + DVU3254 0.68 +0.3
3,427,237 - DVU3254 0.69 +0.5

Or see this region's nucleotide sequence